Skip to content

Release 1.3.0

Compare
Choose a tag to compare
@oostenbrink oostenbrink released this 15 Apr 16:05
· 888 commits to master since this release

GROMOS 11 version 1.3.0 (May 2016)

New functionalities:

  • Polarisable force-field code [1].
  • Order-parameter restraining [2].
  • Distance-field restraining [3].
  • Coarse-grained models [4].

References:

  1. S.J. Bachmann, W.F. van Gunsteren, On the compatibility of polarisable and non-polarisable models for liquid water, Mol. Phys. 112 (2014) 2761-2780, doi: 10.1080/00268976.2014.910317
  2. N. Hansen, F. Heller, N Schmid, W.F. van Gunsteren, Time-averaged order parameter restraints in molecular dynamics simulations, J. Biomol. NMR 60 (2014) 169-187, doi: 10.1007/s10858-014-9866-7
  3. A. de Ruiter, C. Oostenbrink, Protein-Ligand Binding from Distancefield Distances and Hamiltonian Replica Exchange Simulations, J. Chem. Theory Comput. 9 (2013) 883-892, doi: 10.1021/ct300967a
  4. S. Riniker, J.R. Allison, W.F. van Gunsteren, On developing coarse-grained models for biomolecular simulation: a review, Phys. Chem. Chem. Phys. 14 (2012) 12423-12430, doi: 10.1039/C2CP40934H