Skip to content

Commit

Permalink
Generate MAxO-MeSH predictions (#137)
Browse files Browse the repository at this point in the history
As requested by Peter, this PR adds predictions between the Medical
Action Ontology (MAxO) and MeSH. I made a small number of curations
already, but will leave others from someone on their team to try on
their own.
  • Loading branch information
cthoyt authored Jul 24, 2023
1 parent 3acffb6 commit 35397e0
Show file tree
Hide file tree
Showing 3 changed files with 216 additions and 0 deletions.
21 changes: 21 additions & 0 deletions scripts/generate_maxo_mesh_mappings.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
# -*- coding: utf-8 -*-

"""Generate mappings to Gilda from given PyOBO prefixes."""

import click
from more_click import verbose_option

from biomappings.gilda_utils import append_gilda_predictions
from biomappings.utils import get_script_url


@click.command()
@verbose_option
def main():
"""Generate MAxO mappings."""
provenance = get_script_url(__file__)
append_gilda_predictions("maxo", ["mesh"], provenance=provenance)


if __name__ == "__main__":
main()
Loading

0 comments on commit 35397e0

Please sign in to comment.