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Lexically match MAxO and MeSH
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cthoyt committed Jul 24, 2023
1 parent 3acffb6 commit 4cbcbe4
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21 changes: 21 additions & 0 deletions scripts/generate_maxo_mesh_mappings.py
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# -*- coding: utf-8 -*-

"""Generate mappings to Gilda from given PyOBO prefixes."""

import click
from more_click import verbose_option

from biomappings.gilda_utils import append_gilda_predictions
from biomappings.utils import get_script_url


@click.command()
@verbose_option
def main():
"""Generate MAxO mappings."""
provenance = get_script_url(__file__)
append_gilda_predictions("maxo", ["mesh"], provenance=provenance)


if __name__ == "__main__":
main()
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2 comments on commit 4cbcbe4

@pnrobinson
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cool! Can we talk in late August?

@cthoyt
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@cthoyt cthoyt commented on 4cbcbe4 Jul 24, 2023

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@pnrobinson sounds like a great idea. If you have a specific curator in mind who you want me to train in the meantime on how to use the Biomappings interface, please send them my way on either github or email ([email protected])

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