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Curate more UBERON-BTO mappings
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@cthoyt
cthoyt committed Jul 4, 2023
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2 changes: 2 additions & 0 deletions src/biomappings/resources/incorrect.tsv
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Expand Up @@ -1390,6 +1390,8 @@ reactome R-XTR-8877627 Vitamin E skos:exactMatch mesh D014810 Vitamin E semapv:M
reactome R-XTR-9664873 Pexophagy speciesSpecific go GO:0030242 autophagy of peroxisome semapv:ManualMappingCuration orcid:0000-0003-4423-4370
reactome R-XTR-983189 Kinesins speciesSpecific fplx Kinesin Kinesin semapv:ManualMappingCuration orcid:0000-0003-4423-4370
uberon UBERON:0000104 life cycle skos:exactMatch mesh D008018 Life Cycle Stages semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0000353 parenchyma skos:exactMatch bto BTO:0000999 plant parenchyma semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0001263 pancreatic acinus skos:exactMatch bto BTO:0000028 pancreatic acinar cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0012245 silk skos:exactMatch bto BTO:0002854 corn silk semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0022469 primary olfactory cortex skos:exactMatch mesh D066194 Olfactory Cortex semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:2001977 pad skos:exactMatch mesh D058729 Peripheral Arterial Disease semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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8 changes: 8 additions & 0 deletions src/biomappings/resources/mappings.tsv
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Expand Up @@ -9313,11 +9313,13 @@ uberon UBERON:0001862 vestibular labyrinth skos:exactMatch mesh D014722 Vestibul
uberon UBERON:0001863 scala vestibuli skos:exactMatch mesh D054738 Scala Vestibuli semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0001883 olfactory tubercle skos:exactMatch mesh D066208 Olfactory Tubercle semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0001907 zona incerta skos:exactMatch mesh D065820 Zona Incerta semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0001931 lateral preoptic nucleus skos:exactMatch bto BTO:0006166 nucleus preopticus lateralis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0001944 pretectal region skos:exactMatch mesh D066250 Pretectal Region semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0001947 red nucleus skos:exactMatch bto BTO:0006329 red nucleus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9
uberon UBERON:0001977 blood serum skos:exactMatch mesh D044967 Serum semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0001995 fibrocartilage skos:exactMatch mesh D051445 Fibrocartilage semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002020 gray matter skos:exactMatch mesh D066128 Gray Matter semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002035 medial preoptic nucleus skos:exactMatch bto BTO:0006167 nucleus preopticus medialis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0002043 dorsal raphe nucleus skos:exactMatch mesh D065847 Dorsal Raphe Nucleus semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002062 endocardial cushion skos:exactMatch mesh D054089 Endocardial Cushions semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002120 pronephros skos:exactMatch mesh D060910 Pronephros semapv:ManualMappingCuration orcid:0000-0001-9439-5346
Expand All @@ -9337,20 +9339,24 @@ uberon UBERON:0002373 palatine tonsil skos:exactMatch mesh D014066 Palatine Tons
uberon UBERON:0002396 vomer skos:exactMatch mesh D055172 Vomer semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002409 pericardial fluid skos:exactMatch mesh D000069236 Pericardial Fluid semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002412 vertebra skos:exactMatch bto BTO:0006196 vertebra semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9
uberon UBERON:0002430 lateral hypothalamic area skos:exactMatch bto BTO:0006481 lateral hypothalamus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0002469 esophagus mucosa skos:exactMatch mesh D000071041 Esophageal Mucosa semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002493 uterine artery skos:exactMatch mesh D055988 Uterine Artery semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002540 lateral line system skos:exactMatch mesh D053403 Lateral Line System semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002548 larva skos:exactMatch mesh D007814 Larva semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002600 limbic lobe skos:exactMatch mesh D065726 Limbic Lobe semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002623 cerebral peduncle skos:exactMatch mesh D065850 Cerebral Peduncle semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002625 median preoptic nucleus skos:exactMatch bto BTO:0006168 nucleus preopticus medianus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0002631 cerebral crus skos:exactMatch mesh D065843 Cerebral Crus semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002639 midbrain reticular formation skos:exactMatch mesh D066265 Midbrain Reticular Formation semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002682 abducens nucleus skos:exactMatch mesh D065827 Abducens Nucleus semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002684 nucleus raphe obscurus skos:exactMatch mesh D065849 Nucleus Raphe Obscurus semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002689 supraoptic crest skos:exactMatch bto BTO:0006268 organum vasculosum laminae terminalis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0002707 corticospinal tract skos:exactMatch bto BTO:0006132 corticospinal tract semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9
uberon UBERON:0002714 rubrospinal tract skos:exactMatch bto BTO:0006159 rubrospinal tract semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9
uberon UBERON:0002743 basal forebrain skos:exactMatch mesh D066187 Basal Forebrain semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0002751 inferior temporal gyrus skos:exactMatch bto BTO:0006175 inferior temporal gyrus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9
uberon UBERON:0002752 olivocerebellar tract skos:exactMatch bto BTO:0006157 olivocerebellar fiber system semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0002769 superior temporal gyrus skos:exactMatch bto BTO:0006177 superior temporal gyrus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9
uberon UBERON:0002771 middle temporal gyrus skos:exactMatch bto BTO:0006176 middle temporal gyrus semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9
uberon UBERON:0002883 central amygdaloid nucleus skos:exactMatch mesh D066274 Central Amygdaloid Nucleus semapv:ManualMappingCuration orcid:0000-0001-9439-5346
Expand All @@ -9377,6 +9383,7 @@ uberon UBERON:0003911 choroid plexus epithelium skos:exactMatch bto BTO:0006008
uberon UBERON:0003937 reproductive gland skos:exactMatch bto BTO:0006162 reproductive gland semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9
uberon UBERON:0004016 dermatome skos:exactMatch bto BTO:0006248 dermatome semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_uberon_bto_mappings.py 0.9
uberon UBERON:0004341 primitive streak skos:exactMatch mesh D054240 Primitive Streak semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0004637 otic capsule skos:exactMatch bto BTO:0005981 auditory capsule semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0004676 spinal cord lateral horn skos:exactMatch mesh D066152 Spinal Cord Lateral Horn semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0004720 cerebellar vermis skos:exactMatch mesh D065814 Cerebellar Vermis semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0004725 piriform cortex skos:exactMatch mesh D066195 Piriform Cortex semapv:ManualMappingCuration orcid:0000-0001-9439-5346
Expand All @@ -9388,6 +9395,7 @@ uberon UBERON:0005408 circumventricular organ skos:exactMatch bto BTO:0006267 ci
uberon UBERON:0005408 circumventricular organ skos:exactMatch mesh D066280 Circumventricular Organs semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0005438 coronary sinus skos:exactMatch mesh D054326 Coronary Sinus semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0005456 jugular foramen skos:exactMatch mesh D000080869 Jugular Foramina semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0005498 primitive heart tube skos:exactMatch bto BTO:0006179 cardiac tube semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0005631 extraembryonic membrane skos:exactMatch mesh D005321 Extraembryonic Membranes semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0005742 adventitia skos:exactMatch mesh D063194 Adventitia semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0005777 glomerular basement membrane skos:exactMatch mesh D050533 Glomerular Basement Membrane semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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