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CPT curations
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@cthoyt
cthoyt committed Aug 15, 2023
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8 changes: 8 additions & 0 deletions src/biomappings/resources/incorrect.tsv
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Expand Up @@ -211,6 +211,14 @@ clo 0037261 3T3-derived cell skos:exactMatch mesh D016475 3T3 Cells semapv:Manua
clo 0037287 COR123 cell skos:exactMatch efo 0002142 CORL23 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:UnspecifiedMatching clo 0.8
clo 0051004 RCB0256 cell skos:exactMatch cellosaurus CVCL_1075 BALL-1 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:UnspecifiedMatching clo 0.8
clo 0051005 RCB1882 cell skos:exactMatch cellosaurus CVCL_1075 BALL-1 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:UnspecifiedMatching clo 0.8
cpt 90581 anthrax skos:exactMatch mesh D000881 Anthrax semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.762
cpt 90585 BCG skos:exactMatch mesh D009163 Mycobacterium bovis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.556
cpt 90665 Lyme disease skos:exactMatch mesh D008193 Lyme Disease semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.772
cpt 90704 mumps skos:exactMatch mesh D009107 Mumps semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.762
cpt 90705 measles skos:exactMatch mesh D008457 Measles semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.762
cpt 90706 rubella skos:exactMatch mesh D012409 Rubella semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.762
cpt 90716 varicella skos:exactMatch mesh D002644 Chickenpox semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.54
cpt 90727 plague skos:exactMatch mesh D010930 Plague semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.762
doid DOID:0001816 angiosarcoma skos:exactMatch mesh D006394 Hemangiosarcoma semapv:ManualMappingCuration orcid:0000-0003-4423-4370
doid DOID:0001816 angiosarcoma skos:exactMatch umls C0018923 Hemangiosarcoma semapv:ManualMappingCuration orcid:0000-0003-4423-4370
doid DOID:0001816 angiosarcoma skos:exactMatch umls C0278592 Adult Angiosarcoma semapv:ManualMappingCuration orcid:0000-0003-4423-4370
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3 changes: 3 additions & 0 deletions src/biomappings/resources/mappings.tsv
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Expand Up @@ -3060,7 +3060,10 @@ clo 0037291 MDAMB231 cell skos:exactMatch mesh D000092302 MDA-MB-231 Cells semap
clo 0037300 BALL-1 cell skos:exactMatch cellosaurus CVCL_1075 BALL-1 semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:UnspecifiedMatching clo 0.8
clo 0037339 tissue donor skos:exactMatch mesh D014019 Tissue Donors semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/746fde/scripts/generate_clo_mesh_mappings.py 0.54
cpt 90287 botulinum antitoxin skos:exactMatch mesh D001904 Botulinum Antitoxin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.762
cpt 90291 CMVIG skos:exactMatch mesh C045781 cytomegalovirus-specific hyperimmune globulin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.556
cpt 90296 diphtheria antitoxin skos:exactMatch mesh D004166 Diphtheria Antitoxin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.762
cpt 90371 HBIG skos:exactMatch mesh C045213 hepatitis B hyperimmune globulin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.556
cpt 90396 VZIG skos:exactMatch mesh C030799 varicella-zoster immune globulin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.556
cvx 11 pertussis vaccine skos:exactMatch mesh D010567 Pertussis Vaccine semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.762
cvx 12 diphtheria antitoxin skos:exactMatch mesh D004166 Diphtheria Antitoxin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.762
cvx 19 Bacillus Calmette-Guerin vaccine skos:exactMatch mesh D001500 BCG Vaccine semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.54
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12 changes: 0 additions & 12 deletions src/biomappings/resources/predictions.tsv
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Expand Up @@ -9460,18 +9460,6 @@ clo 0037372 HEK293T cell skos:exactMatch cellosaurus CVCL_0063 HEK293T semapv:Un
clo 0050405 RCB2280 cell skos:exactMatch cellosaurus CVCL_1272 HCE-T semapv:UnspecifiedMatching 0.8 clo
clo 0050406 RCB1384 cell skos:exactMatch cellosaurus CVCL_1272 HCE-T semapv:UnspecifiedMatching 0.8 clo
clo 0050894 RCB2202 cell skos:exactMatch cellosaurus CVCL_0063 HEK293T semapv:UnspecifiedMatching 0.8 clo
cpt 90291 CMVIG skos:exactMatch mesh C045781 cytomegalovirus-specific hyperimmune globulin semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cpt 90371 HBIG skos:exactMatch mesh C045213 hepatitis B hyperimmune globulin semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cpt 90396 VZIG skos:exactMatch mesh C030799 varicella-zoster immune globulin semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cpt 90581 anthrax skos:exactMatch mesh D000881 Anthrax semapv:LexicalMatching 0.762 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cpt 90585 BCG skos:exactMatch mesh D009163 Mycobacterium bovis semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cpt 90665 Lyme disease skos:exactMatch mesh D008193 Lyme Disease semapv:LexicalMatching 0.772 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cpt 90704 mumps skos:exactMatch mesh D009107 Mumps semapv:LexicalMatching 0.762 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cpt 90705 measles skos:exactMatch mesh D008457 Measles semapv:LexicalMatching 0.762 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cpt 90706 rubella skos:exactMatch mesh D012409 Rubella semapv:LexicalMatching 0.762 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cpt 90716 varicella skos:exactMatch mesh D002644 Chickenpox semapv:LexicalMatching 0.54 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cpt 90727 plague skos:exactMatch mesh D010930 Plague semapv:LexicalMatching 0.762 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cpt 90728 BCG skos:exactMatch mesh D009163 Mycobacterium bovis semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cvx 10 poliovirus vaccine, inactivated skos:exactMatch mesh D011054 Poliovirus Vaccine, Inactivated semapv:LexicalMatching 0.725 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cvx 103 meningococcal C conjugate vaccine skos:exactMatch mesh C410218 serogroup C meningococcal conjugate vaccine semapv:LexicalMatching 0.556 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
cvx 87 immune globulin, intravenous skos:exactMatch mesh D016756 Immunoglobulins, Intravenous semapv:LexicalMatching 0.502 https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py
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1 change: 1 addition & 0 deletions src/biomappings/resources/unsure.tsv
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Expand Up @@ -32,6 +32,7 @@ chebi CHEBI:68540 teriflunomide skos:exactMatch mesh C072876 A 771726 semapv:Man
chebi CHEBI:8416 Pristimerin skos:exactMatch mesh C009043 pristimerin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching generate_chebi_mesh_mappings.py 0.95
cl CL:0000798 gamma-delta T cell skos:exactMatch mesh D000075942 Intraepithelial Lymphocytes semapv:ManualMappingCuration orcid:0000-0001-9439-5346
cl CL:0000816 immature B cell skos:exactMatch mesh D054448 Precursor Cells, B-Lymphoid semapv:ManualMappingCuration orcid:0000-0001-9439-5346
cpt 90728 BCG skos:exactMatch mesh D009163 Mycobacterium bovis semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/8d4bd2/scripts/generate_vaccine_mappings.py 0.556
doid DOID:0050025 human granulocytic anaplasmosis skos:exactMatch mesh D000712 Anaplasmosis semapv:ManualMappingCuration orcid:0000-0003-4423-4370
doid DOID:0050035 African tick-bite fever skos:exactMatch mesh D000073605 Spotted Fever Group Rickettsiosis semapv:ManualMappingCuration orcid:0000-0003-4423-4370
doid DOID:0050061 erysipeloid skos:exactMatch umls C0014736 Erysipelothrix infection semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/f293d0/scripts/generate_doid_mappings.py 0.5400948258091115
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