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Curated 10 mappings (sumirpandit)
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sumirp committed Sep 25, 2024
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1 change: 1 addition & 0 deletions src/biomappings/resources/incorrect.tsv
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Expand Up @@ -901,6 +901,7 @@ mondo 0001049 Dressler syndrome skos:exactMatch mesh C538618 Donath-Landsteiner
mondo 0005187 human herpesvirus 8 infection skos:exactMatch mesh D019288 Herpesvirus 8, Human semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007028 rotator cuff syndrome skos:exactMatch mesh D000070636 Rotator Cuff Injuries semapv:ManualMappingCuration orcid:0000-0003-4423-4370
mondo 0007323 Chondronectin skos:exactMatch mesh C029172 chondronectin protein, human semapv:ManualMappingCuration orcid:0000-0003-4423-4370
mondo 0008718 Morvan syndrome skos:exactMatch mesh D020385 Myokymia semapv:ManualMappingCuration web-sumirpandit semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0015053 hereditary angioedema type 1 skos:exactMatch mesh D056829 Hereditary Angioedema Types I and II semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0020320 acute myeloblastic leukemia with maturation skos:exactMatch mesh D000650 Amnion semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0021248 nervous system neoplasm skos:exactMatch mesh D009380 Neoplasms, Nerve Tissue semapv:ManualMappingCuration orcid:0000-0002-1216-4761 semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
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6 changes: 6 additions & 0 deletions src/biomappings/resources/mappings.tsv
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Expand Up @@ -972,6 +972,7 @@ chebi CHEBI:10129 Zwittergent 3-14 skos:exactMatch mesh C048256 zwittergent 3-14
chebi CHEBI:10136 gingerol skos:exactMatch mesh C007845 gingerol semapv:ManualMappingCuration orcid:0000-0001-9439-5346
chebi CHEBI:1014 2-Aminoadenosine skos:exactMatch mesh C033854 2-aminoadenosine semapv:ManualMappingCuration orcid:0000-0001-9439-5346
chebi CHEBI:101854 talarozole skos:exactMatch mesh C406527 R 115866 semapv:ManualMappingCuration orcid:0000-0003-4423-4370
chebi CHEBI:1019 N-(2-phosphonoethyl)cholamide skos:exactMatch mesh C013886 ciliatocholic acid semapv:ManualMappingCuration web-sumirpandit semapv:LexicalMatching generate_chebi_mesh_mappings.py 0.95
chebi CHEBI:102029 sorbinil skos:exactMatch mesh C026411 sorbinil semapv:ManualMappingCuration orcid:0000-0001-9439-5346
chebi CHEBI:10213 alpha-amyrin skos:exactMatch mesh C000654244 alpha-amyrin semapv:ManualMappingCuration orcid:0000-0001-9439-5346
chebi CHEBI:10219 alpha-Chaconine skos:exactMatch mesh C011860 alpha-chaconine semapv:ManualMappingCuration orcid:0000-0001-9439-5346
Expand Down Expand Up @@ -9314,22 +9315,27 @@ mondo 0001357 hypochromic anemia skos:exactMatch mesh D000747 Anemia, Hypochromi
mondo 0001688 toxic optic neuropathy skos:exactMatch mesh D000081028 Toxic Optic Neuropathy semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0002012 methylmalonic acidemia skos:exactMatch mesh C537358 Methylmalonic acidemia semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0002648 mammary Paget disease skos:exactMatch mesh D010144 Paget's Disease, Mammary semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0002814 adrenal carcinoma skos:narrowMatch mesh D018268 Adrenocortical Carcinoma semapv:ManualMappingCuration web-sumirpandit semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0005161 human papilloma virus infection skos:exactMatch mesh D030361 Papillomavirus Infections semapv:ManualMappingCuration orcid:0000-0003-4423-4370
mondo 0005594 severe cutaneous adverse reaction skos:exactMatch mesh D002921 Cicatrix semapv:ManualMappingCuration orcid:0000-0002-1216-4761 semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0005607 chronic bronchitis skos:exactMatch mesh D029481 Bronchitis, Chronic semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0006033 diffuse intrinsic pontine glioma skos:exactMatch mesh D000080443 Diffuse Intrinsic Pontine Glioma semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0006094 Askin tumor skos:exactMatch mesh C563168 Askin Tumor semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0006209 fibroblastic neoplasm skos:narrowMatch mesh D005354 Fibrosarcoma semapv:ManualMappingCuration web-sumirpandit semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0007082 alopecia areata 1 skos:exactMatch mesh C566303 Alopecia Areata 1 semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007088 Alzheimer disease type 1 skos:exactMatch mesh C536594 Alzheimer disease type 1 semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007110 Diamond-Blackfan anemia 1 skos:exactMatch mesh C567302 Diamond-Blackfan Anemia 1 semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007116 hereditary neurocutaneous angioma skos:exactMatch mesh C536364 Angioma hereditary neurocutaneous semapv:ManualMappingCuration web-sumirpandit semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0007329 cirrhosis, familial skos:exactMatch mesh C566123 Cirrhosis, Familial semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007390 coumarin resistance skos:exactMatch mesh C563039 Coumarin Resistance semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007440 major affective disorder 1 skos:exactMatch mesh C565111 Major Affective Disorder 1 semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007459 dilution, pigmentary skos:exactMatch mesh C566872 Dilution, Pigmentary semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007547 epidermoid cysts skos:exactMatch mesh D004814 Epidermal Cyst semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007578 esterase B skos:exactMatch mesh C049262 esterase B semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007608 desmoid tumor skos:exactMatch mesh D018222 Fibromatosis, Aggressive semapv:ManualMappingCuration orcid:0000-0002-1216-4761 semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0007614 congenital fibrosis of extraocular muscles skos:exactMatch mesh C580012 Congenital Fibrosis of the Extraocular Muscles semapv:ManualMappingCuration web-sumirpandit semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0007767 hyperparathyroidism 1 skos:exactMatch mesh C564166 Hyperparathyroidism 1 semapv:ManualMappingCuration orcid:0000-0003-4423-4370
mondo 0007794 hypogonadotropic hypogonadism 7 with or without anosmia skos:exactMatch mesh C562785 Idiopathic Hypogonadotropic Hypogonadism semapv:ManualMappingCuration web-sumirpandit semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0007817 IgE responsiveness, atopic skos:exactMatch mesh C564133 Ige Responsiveness, Atopic semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007909 familial multiple lipomatosis skos:exactMatch mesh D000071070 Familial Multiple Lipomatosis semapv:ManualMappingCuration orcid:0000-0001-9439-5346
mondo 0007942 Mammastatin skos:exactMatch mesh C060120 mammastatin semapv:ManualMappingCuration orcid:0000-0001-9439-5346
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10 changes: 0 additions & 10 deletions src/biomappings/resources/predictions.tsv
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source prefix source identifier source name relation target prefix target identifier target name type confidence source
chebi CHEBI:101096 ethoxzolamide skos:exactMatch mesh C523270 6-ethoxybenzothiazole-2-sulfonamide semapv:LexicalMatching 0.95 generate_chebi_mesh_mappings.py
chebi CHEBI:1019 N-(2-phosphonoethyl)cholamide skos:exactMatch mesh C013886 ciliatocholic acid semapv:LexicalMatching 0.95 generate_chebi_mesh_mappings.py
chebi CHEBI:10357 (-)-beta-caryophyllene skos:exactMatch mesh C024714 caryophyllene semapv:LexicalMatching 0.9 https://github.com/indralab/panacea_indra/blob/master/panacea_indra/make_ctd_tests.py
chebi CHEBI:104234 1-(1,2-diphenylethyl)piperidine skos:exactMatch mesh C000599677 diphenidine semapv:LexicalMatching 0.95 generate_chebi_mesh_mappings.py
chebi CHEBI:10556 (-)-trans-epsilon-viniferin skos:exactMatch mesh C091891 epsilon-viniferin semapv:LexicalMatching 0.95 generate_chebi_mesh_mappings.py
Expand Down Expand Up @@ -52144,16 +52143,7 @@ mesh D066208 Olfactory Tubercle skos:exactMatch ncit C33371 Posterior Olfactory
mesh D066229 Speech Sound Disorder skos:exactMatch ncit C92564 Phonological Disorder semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/a80ed2/scripts/import_gilda_mappings.py
mesh D066259 Betacellulin skos:exactMatch hgnc 1121 BTC semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/492ede/scripts/import_gilda_mappings.py
mesh D066261 Epigen skos:exactMatch hgnc 17470 EPGN semapv:LexicalMatching 0.95 https://github.com/biomappings/biomappings/blob/492ede/scripts/import_gilda_mappings.py
mondo 0001115 familial polycythemia skos:exactMatch mesh C536842 Polycythemia, primary familial and congenital semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0002814 adrenal carcinoma skos:exactMatch mesh D018268 Adrenocortical Carcinoma semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0006209 fibroblastic neoplasm skos:exactMatch mesh D005354 Fibrosarcoma semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0007116 hereditary neurocutaneous angioma skos:exactMatch mesh C536364 Angioma hereditary neurocutaneous semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0007614 congenital fibrosis of extraocular muscles skos:exactMatch mesh C580012 Congenital Fibrosis of the Extraocular Muscles semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0007794 hypogonadotropic hypogonadism 7 with or without anosmia skos:exactMatch mesh C562785 Idiopathic Hypogonadotropic Hypogonadism semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0007876 laryngeal abductor paralysis skos:exactMatch mesh C536354 Vocal cord dysfunction familial semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0008718 Morvan syndrome skos:exactMatch mesh D020385 Myokymia semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0008751 corticosterone methyloxidase type 1 deficiency skos:exactMatch mesh C537806 18-Hydroxylase deficiency semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0008888 Williams-Campbell syndrome skos:exactMatch mesh D055089 Tracheobronchomalacia semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0009336 hemosiderosis, pulmonary, with deficiency of gamma-a globulin skos:exactMatch mesh C536281 Idiopathic pulmonary hemosiderosis semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0009349 holoprosencephaly 1 skos:exactMatch mesh C562573 cyclopia sequence semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
mondo 0009606 methemoglobinemia due to deficiency of methemoglobin reductase skos:exactMatch mesh C537841 NADH cytochrome B5 reductase deficiency semapv:LexicalMatching 0.9 generate_mondo_mesh_mappings.py
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3 changes: 3 additions & 0 deletions src/biomappings/resources/unsure.tsv
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Expand Up @@ -82,6 +82,9 @@ mesh D021581 Active Transport, Cell Nucleus skos:exactMatch go GO:0051169 nuclea
mesh D051716 Replication Protein A skos:exactMatch go GO:0005662 DNA replication factor A complex semapv:ManualMappingCuration orcid:0000-0003-4423-4370
mesh D059268 Atrophic Vaginitis skos:exactMatch doid DOID:11968 postmenopausal atrophic vaginitis semapv:ManualMappingCuration orcid:0000-0003-1307-2508
mesh D063306 Mitochondrial Degradation skos:exactMatch go GO:0000423 mitophagy semapv:ManualMappingCuration orcid:0000-0003-4423-4370
mondo 0001115 familial polycythemia skos:exactMatch mesh C536842 Polycythemia, primary familial and congenital semapv:ManualMappingCuration web-sumirpandit semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0007876 laryngeal abductor paralysis skos:exactMatch mesh C536354 Vocal cord dysfunction familial semapv:ManualMappingCuration web-sumirpandit semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0008888 Williams-Campbell syndrome skos:exactMatch mesh D055089 Tracheobronchomalacia semapv:ManualMappingCuration web-sumirpandit semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0010778 cyclic vomiting syndrome skos:exactMatch mesh C536228 Familial cyclic vomiting syndrome semapv:ManualMappingCuration orcid:0000-0002-1216-4761 semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
mondo 0019636 renal agenesis, unilateral skos:exactMatch mesh D000075529 Solitary Kidney semapv:ManualMappingCuration orcid:0000-0002-1216-4761 semapv:LexicalMatching generate_mondo_mesh_mappings.py 0.9
obi OBI:0000430 plasmid skos:exactMatch ncbitaxon 45202 unidentified plasmid semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching kestrel-mappings 0.778
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