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Additional cell, cell line, and tissue curations #135

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merged 4 commits into from
Jul 4, 2023
Merged

Additional cell, cell line, and tissue curations #135

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8d385e8
Curate remaining predictions with BTO as source prefix
cthoyt Jul 4, 2023
016bf71
more curation
cthoyt Jul 4, 2023
514afa8
Merge branch 'master' into curation-july-4
cthoyt Jul 4, 2023
8fb8846
Curate more UBERON-BTO mappings
cthoyt Jul 4, 2023
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7 changes: 7 additions & 0 deletions src/biomappings/resources/incorrect.tsv
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Expand Up @@ -20,9 +20,14 @@ agrovoc 7b960f69 rainwater harvesting skos:exactMatch agro 00000589 water harves
agrovoc 8446 working animals skos:exactMatch agro 00002004 draft animal role semapv:ManualMappingCuration orcid:0000-0002-2627-0696
agrovoc fdfbb37f parcels skos:exactMatch agro 00000301 agricultural experimental plot semapv:ManualMappingCuration orcid:0000-0002-2627-0696
apollosv 00000094 community skos:exactMatch ncit C16453 Community semapv:ManualMappingCuration orcid:0000-0003-4423-4370
apollosv 00000172 susceptibility skos:exactMatch pato PATO:0001043 susceptibility toward semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching mira 0.5555555555555556
apollosv 00000340 agonism skos:exactMatch nbo 0000015 aggressive behavior semapv:ManualMappingCuration orcid:0000-0003-4423-4370
apollosv 00000340 agonism skos:exactMatch nbo 0000121 agonistic behavior semapv:ManualMappingCuration orcid:0000-0003-4423-4370
apollosv 00000496 ORCID skos:exactMatch ncit C188272 ORCID semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching mira 0.7777777777777778
bto BTO:0002830 DB-1 cell skos:exactMatch cl CL:4033027 diffuse bipolar 1 cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.555
bto BTO:0004500 R1 cell skos:exactMatch cl CL:0000687 R1 photoreceptor cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.556
bto BTO:0005825 ctenidium skos:exactMatch ncbitaxon 90308 Ctenidium semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching kestrel-mappings 0.762
bto BTO:0006359 TEX cell skos:exactMatch cl CL:0011025 exhausted T cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/cc126c/scripts/generate_bto_cl_mappings.py 0.549
ccle 697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE 697 skos:exactMatch cellosaurus CVCL_8056 697-mel semapv:ManualMappingCuration orcid:0000-0003-1307-2508
ccle A204_SOFT_TISSUE A-204 skos:exactMatch cellosaurus CVCL_1N55 Urd-B semapv:ManualMappingCuration orcid:0000-0003-1307-2508
ccle ABC1_LUNG ABC-1 skos:exactMatch cellosaurus CVCL_ZB62 AbC1 semapv:ManualMappingCuration orcid:0000-0003-1307-2508
Expand Down Expand Up @@ -1385,6 +1390,8 @@ reactome R-XTR-8877627 Vitamin E skos:exactMatch mesh D014810 Vitamin E semapv:M
reactome R-XTR-9664873 Pexophagy speciesSpecific go GO:0030242 autophagy of peroxisome semapv:ManualMappingCuration orcid:0000-0003-4423-4370
reactome R-XTR-983189 Kinesins speciesSpecific fplx Kinesin Kinesin semapv:ManualMappingCuration orcid:0000-0003-4423-4370
uberon UBERON:0000104 life cycle skos:exactMatch mesh D008018 Life Cycle Stages semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:0000353 parenchyma skos:exactMatch bto BTO:0000999 plant parenchyma semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0001263 pancreatic acinus skos:exactMatch bto BTO:0000028 pancreatic acinar cell semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0012245 silk skos:exactMatch bto BTO:0002854 corn silk semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/530a1b/scripts/generate_uberon_bto_mappings.py 0.556
uberon UBERON:0022469 primary olfactory cortex skos:exactMatch mesh D066194 Olfactory Cortex semapv:ManualMappingCuration orcid:0000-0001-9439-5346
uberon UBERON:2001977 pad skos:exactMatch mesh D058729 Peripheral Arterial Disease semapv:ManualMappingCuration orcid:0000-0001-9439-5346
Expand Down
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