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Override MIRIAM OBI pattern #143

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merged 1 commit into from
Aug 14, 2023
Merged

Override MIRIAM OBI pattern #143

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2 changes: 2 additions & 0 deletions src/biomappings/utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -213,6 +213,8 @@ def check_valid_prefix_id(prefix: str, identifier: str):
raise InvalidNormIdentifier(prefix, identifier, norm_id)
if prefix == "pr":
pattern = None # identifiers.org is broken for uniprot in PR
elif prefix == "obi":
pattern = re.compile(r"^OBI:\d{7,8}$") # identifiers.org is broken for OBI
else:
pattern = re.compile(resource.miriam["pattern"])

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