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Add py39 tests #9

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merged 10 commits into from
Nov 27, 2023
Merged

Add py39 tests #9

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f9d4d17
Add 39 tests
cthoyt Nov 27, 2023
0517e7f
Merge branch 'main' into add39test
cthoyt Nov 27, 2023
d4f5cfa
Merge branch 'main' into add39test
cthoyt Nov 27, 2023
2c49e91
Update client.py
cthoyt Nov 27, 2023
d4182cc
Update pyproject.toml
cthoyt Nov 27, 2023
ca6b47a
Update pyproject.toml
cthoyt Nov 27, 2023
22ce464
Update pyproject.toml
cthoyt Nov 27, 2023
8f24a51
Update client.py
cthoyt Nov 27, 2023
aff6db5
Update client.py
cthoyt Nov 27, 2023
8ce8dde
Update pyproject.toml
cthoyt Nov 27, 2023
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2 changes: 1 addition & 1 deletion .github/workflows/tests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ jobs:
strategy:
matrix:
os: [ ubuntu-latest ]
python-version: [ "3.11" ]
python-version: [ "3.11", "3.9" ]
pydantic: [ "pydantic1", "pydantic2" ]
steps:
- uses: actions/checkout@v2
Expand Down
10 changes: 6 additions & 4 deletions pyproject.toml
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Expand Up @@ -7,7 +7,7 @@ name = "semra"
dynamic = ["version"]
description = 'Semantic Mapping Reasoning Assembler'
readme = "README.md"
requires-python = ">=3.10"
requires-python = ">=3.9"
license = "MIT"
keywords = []
authors = [
Expand All @@ -16,6 +16,7 @@ authors = [
classifiers = [
"Development Status :: 4 - Beta",
"Programming Language :: Python",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: Implementation :: CPython",
Expand All @@ -31,6 +32,7 @@ dependencies = [
"bioregistry",
"bioontologies",
"pyobo",
"typing_extensions",
]

[project.optional-dependencies]
Expand Down Expand Up @@ -74,7 +76,7 @@ cov = [
]

[[tool.hatch.envs.all.matrix]]
python = ["3.10", "3.11"]
python = ["3.9", "3.11"]

[tool.hatch.envs.lint]
detached = true
Expand All @@ -100,11 +102,11 @@ all = [
]

[tool.black]
target-version = ["py311"]
target-version = ["py39"]
line-length = 120

[tool.ruff]
target-version = "py311"
target-version = "py39"
line-length = 120
select = [
"A",
Expand Down
7 changes: 4 additions & 3 deletions src/semra/client.py
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Expand Up @@ -5,14 +5,15 @@
import os
import typing as t
from collections import Counter
from typing import Any, TypeAlias
from typing import Any

import bioregistry
import neo4j
import neo4j.graph
import networkx as nx
import pydantic
from neo4j import Transaction, unit_of_work
from typing_extensions import TypeAlias

import semra
from semra import Evidence, MappingSet, Reference
Expand All @@ -25,9 +26,9 @@

Node: TypeAlias = t.Mapping[str, Any]

TxResult: TypeAlias = list[list[Any]] | None
TxResult: TypeAlias = t.Optional[list[list[Any]]]

ReferenceHint: TypeAlias = str | Reference
ReferenceHint: TypeAlias = t.Union[str, Reference]


class Neo4jClient:
Expand Down
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