Avoid git cherry-pick #83
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| name: Build Wheels | |
| on: [push, pull_request] | |
| jobs: | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # macos-13 is an intel runner, macos-14 is apple silicon | |
| os: [ubuntu-20.04, windows-2019, macos-13, macos-14] | |
| env: | |
| # Seems to have trouble parsing our setup.py, thus: | |
| CIBW_PROJECT_REQUIRES_PYTHON: ">=3.9" | |
| # Install numpy with a wheel (do NOT compile it): | |
| CIBW_BEFORE_BUILD: "pip install --only-binary :all: -r requirements.txt" | |
| # There are/were no numpy wheels for these: | |
| CIBW_SKIP: pp37-* pp38-* pp39-* pp310-* cp39-manylinux_i686 cp310-manylinux_i686 cp311-manylinux_i686 cp312-manylinux_i686 *-musllinux_* | |
| # configure cibuildwheel to build native arch & aarch64 too | |
| CIBW_ARCHS_LINUX: auto aarch64 | |
| # Quick test with C code using NumPy C API: | |
| CIBW_TEST_COMMAND: "python {package}/Tests/test_Cluster.py" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Optional | |
| submodules: true # Optional, use if you have submodules | |
| - name: Set up QEMU | |
| if: runner.os == 'Linux' | |
| uses: docker/setup-qemu-action@v3 | |
| with: | |
| platforms: all | |
| - name: Checkout tag/commit | |
| run: | | |
| git submodule update --init biopython | |
| cd biopython | |
| # Use commit hash if tag is still pending: | |
| # This is some commits after Biopython 1.84 but before 1.85, to test a CPython 3.13 fix: | |
| git checkout 22ebf951e736bd44f04e3552a4a39723ccb3c219 | |
| cd .. | |
| - name: Build wheels | |
| uses: pypa/[email protected] | |
| with: | |
| package-dir: biopython | |
| output-dir: wheelhouse | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }} | |
| path: ./wheelhouse/*.whl |