Add repair functions #292

Job	Run time
Build documentation	6m 58s
Generate wheels matrix	16s
Compile the CCD subset for structure.info from the wwPDB CCD	9m 3s
Build source distribution	58s
Test interfaces to databases and applications	7m 47s
Test interface to Muscle 5	5m 6s
Build & Test (cp310-manylinux_x86_64, ubuntu-20.04)	16m 35s
Build & Test (cp311-manylinux_x86_64, ubuntu-20.04)	16m 11s
Build & Test (cp312-manylinux_x86_64, ubuntu-20.04)	14m 56s
Build & Test (cp310-macosx_x86_64, macos-11)	26m 36s
Build & Test (cp310-macosx_arm64, macos-11)	8m 5s
Build & Test (cp311-macosx_x86_64, macos-11)	24m 31s
Build & Test (cp311-macosx_arm64, macos-11)	8m 5s
Build & Test (cp312-macosx_x86_64, macos-11)	26m 13s
Build & Test (cp312-macosx_arm64, macos-11)	7m 43s
Build & Test (cp310-win_amd64, windows-2019)	15m 48s
Build & Test (cp311-win_amd64, windows-2019)	12m 58s
Build & Test (cp312-win_amd64, windows-2019)	13m 44s
Upload documentation to GitHub Releases	14s
Upload package to GitHub Releases & PyPI	0s
	3h 41m 47s

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