Introduce Rust code into Biotite #814
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Add codspeed benchmarks
Use new PyO3 API to improve performance
Infer missing elements for consistency with Biotite
This is not supported by CodSpeed
…ng numpy versions
Update pyo3 and numpy crate versions to support python 3.13
Fix upload of release artifacts
Update action versions
This makes the behavior using io.StringIO match the behavior when reading from a file
pad short lines when reading from non-file io
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Resolves #688.
This PR introduces Rust code into Biotite. To make it work along the existing Cython modules the build backend is switched back to
setuptools, usingsetuptools-rustto build the Rust modules.The Rust code ends up in a single compiled file, accessible via
biotite.rust. However this module contains multiple submodules mimicing the structure ofbiotiteitself. For example there isbiotite.rust.structure.io.pdb.As initial module this PR integrates
fastpdbinto Biotite, including some refactoring.