This repository contains materials accompanying the Functional Genomics Center Zürich course Next-Generation Sequencing Applied to Metagenomics (BIO638). To jump directly to the analysis notebooks, click on the badges for the corresponding tutorials below.
These notebooks describe simplified analyses of microbiome datasets using the with the bioinformatics platform QIIME 2. To learn more about the QIIME 2 project and applications in microbiome research, visit https://qiime2.org/. These materials have been adapted from the Advanced Block Course: Computational Biology; all source code is licensed under the Apache License 2.0.
In this notebook, we use previously processed 16S rRNA sequence data to train and evaluate machine learning models. To launch, click on the badge above.
This analysis notebook was adapted from the QIIME 2 q2-sample-classifier tutorial.
The Google Colab setup script was adapted from the Advanced Block Course: Computational Biology.
All source code is licensed under the Apache License 2.0.
