Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Script to generate Allen mouse brain atlas with barrel annotations #313

Merged
merged 26 commits into from
Aug 2, 2024

Update filenames in meshes_dict

1d6f684
Select commit
Loading
Failed to load commit list.
Merged

Script to generate Allen mouse brain atlas with barrel annotations #313

Update filenames in meshes_dict
1d6f684
Select commit
Loading
Failed to load commit list.
Codecov / codecov/patch failed Aug 2, 2024 in 0s

0.00% of diff hit (target 23.39%)

View this Pull Request on Codecov

0.00% of diff hit (target 23.39%)

Annotations

Check warning on line 4 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L1-L4 

Added lines #L1 - L4 were not covered by tests

Check warning on line 15 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L6-L15 

Added lines #L6 - L15 were not covered by tests

Check warning on line 18 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L17-L18 

Added lines #L17 - L18 were not covered by tests

Check warning on line 23 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L22-L23 

Added lines #L22 - L23 were not covered by tests

Check warning on line 26 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L26 

Added line #L26 was not covered by tests

Check warning on line 33 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L28-L33 

Added lines #L28 - L33 were not covered by tests

Check warning on line 39 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L36-L39 

Added lines #L36 - L39 were not covered by tests

Check warning on line 43 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L42-L43 

Added lines #L42 - L43 were not covered by tests

Check warning on line 47 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L47 

Added line #L47 was not covered by tests

Check warning on line 55 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L55 

Added line #L55 was not covered by tests

Check warning on line 61 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L60-L61 

Added lines #L60 - L61 were not covered by tests

Check warning on line 66 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L63-L66 

Added lines #L63 - L66 were not covered by tests

Check warning on line 68 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L68 

Added line #L68 was not covered by tests

Check warning on line 71 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L70-L71 

Added lines #L70 - L71 were not covered by tests

Check warning on line 79 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L79 

Added line #L79 was not covered by tests

Check warning on line 84 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L83-L84 

Added lines #L83 - L84 were not covered by tests

Check warning on line 87 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L87 

Added line #L87 was not covered by tests

Check warning on line 91 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L91 

Added line #L91 was not covered by tests

Check warning on line 98 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L98 

Added line #L98 was not covered by tests

Check warning on line 102 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L101-L102 

Added lines #L101 - L102 were not covered by tests

Check warning on line 109 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L109 

Added line #L109 was not covered by tests

Check warning on line 112 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L112 

Added line #L112 was not covered by tests

Check warning on line 128 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L127-L128 

Added lines #L127 - L128 were not covered by tests

Check warning on line 130 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L130 

Added line #L130 was not covered by tests

Check warning on line 133 in brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse_bluebrain_barrels.py#L132-L133 

Added lines #L132 - L133 were not covered by tests
View more details on Codecov