Bring in line with other package CIs (#167)

* Bring in line with other package CIs

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Alessandro Felder <[email protected]>

.github/workflows/test_and_deploy.yml

@@ -2,20 +2,27 @@ name: tests
 
 on:
   push:
-    branches: [ main ]
+    branches:
+      - "main"
     tags:
-      - '*'
+      - 'v*'
   pull_request:
-    branches: [ '*' ]
+  workflow_dispatch:
 
 jobs:
   linting:
     runs-on: ubuntu-latest
     steps:
       - uses: neuroinformatics-unit/actions/lint@v1
 
+  manifest:
+    name: Check Manifest
+    runs-on: ubuntu-latest
+    steps:
+      - uses: neuroinformatics-unit/actions/check_manifest@v2
+
   test:
-    needs: [linting]
+    needs: [linting, manifest]
     name: ${{ matrix.os }} py${{ matrix.python-version }}
     runs-on: ${{ matrix.os }}
     strategy:

MANIFEST.in

@@ -0,0 +1,11 @@
+include LICENSE
+include README.md
+
+exclude .pre-commit-config.yaml
+exclude codecov.yml
+
+include .napari/config.yml
+
+graft brainglobe_segmentation
+
+prune tests

pyproject.toml

@@ -83,3 +83,36 @@ line-length = 79
 exclude = ["__init__.py", "build", ".eggs"]
 select = ["I", "E", "F"]
 fix = true
+
+[tool.tox]
+legacy_tox_ini = """
+# For more information about tox, see https://tox.readthedocs.io/en/latest/
+[tox]
+envlist = py{38,39,310}
+
+[gh-actions]
+python =
+    3.8: py38
+    3.9: py39
+    3.10: py310
+
+[testenv]
+passenv =
+    CI
+    GITHUB_ACTIONS
+    DISPLAY
+    XAUTHORITY
+    NUMPY_EXPERIMENTAL_ARRAY_FUNCTION
+    PYVISTA_OFF_SCREEN
+deps =
+    pytest  # https://docs.pytest.org/en/latest/contents.html
+    pytest-cov  # https://pytest-cov.readthedocs.io/en/latest/
+    pytest-qt  # https://pytest-qt.readthedocs.io/en/latest/
+    coverage
+    napari
+    pyqt5
+    magicgui
+
+commands = pytest -v --color=yes --cov=brainglobe_segmentation --cov-report=xml
+
+"""