Releases: brainglobe/brainglobe-segmentation
v1.2.4
Summary
- Adapted to using image loading and napari plugin header directly from
brainglobe-utils
. - Maintenance and minor improvements to automated testing setup (CI).
What's Changed
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #171
- Add codecov token by @K-Meech in #173
- Add header from brainglobe-utils by @K-Meech in #172
- run CI on both types of Mac by @alessandrofelder in #174
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #175
- Update use of brainglobe-utils image IO by @adamltyson in #176
New Contributors
- @K-Meech made their first contribution in #173
- @alessandrofelder made their first contribution in #174
Full Changelog: v1.2.3...v1.2.4
v1.2.3
Bump to brainglobe-atlasapi
dependency
bg-atlasapi
has been renamed to brainglobe-atlasapi
, so we now depend on the new package.
What's Changed
- bg-atlasapi -> brainglobe-atlasapi by @willGraham01 in #169
Full Changelog: v1.2.2...v1.2.3
v1.2.2
imio
dependency removal
imio
has been absorbed into brainglobe-utils
, so now we depend directly on utils
.
What's Changed
- Use the updated upload_pypi action by @IgorTatarnikov in #164
- Test job now requires linting by @IgorTatarnikov in #165
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #166
- Bring in line with other package CIs by @willGraham01 in #167
- Create CITATION.cff by @willGraham01 in #163
- Update imio dependency change by @willGraham01 in #168
New Contributors
- @IgorTatarnikov made their first contribution in #164
Full Changelog: v1.2.1...v1.2.2
v1.2.1
What's Changed
- Update GH actions badge by @adamltyson in #161
- Move qtpy utilities to brainglobe-utils by @adamltyson in #162
Full Changelog: v1.2.0...v1.2.1
v1.2.0
What's Changed
- Simplify and update readme by @adamltyson in #151
- Force headless display by @willGraham01 in #152
- Make test assertions approximate by @adamltyson in #154
- Use native dialogs when choosing/setting directories by @adamltyson in #153
- Remove functionality to load atlas by @adamltyson in #156
- Various small changes by @adamltyson in #157
- Report distance from track origin by @adamltyson in #158
- Update pypi documentation link by @adamltyson in #159
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #160
Full Changelog: v1.1.0...v1.2.0
v1.1.0
Minor (but breaking) change
The directory created by brainglobe-segmentation
has been renamed from manual_segmentation
to segmentation
. This reflects compatibility with automated segmentation plugins.
To use this version with data saved with previous versions, you can rename the directory to segmentation
manually.
What's Changed
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #148
- Remove references to manual segmentation by @adamltyson in #150
Full Changelog: v1.0.1...v1.1.0
Minor dependency update
Minor dependency updates
Updates the package dependencies to be compliant with internal BrainGlobe changes and updates to external packages like napari and pandas.
What's Changed
- Update dependencies in line with #143 by @willGraham01 in #144
Full Changelog: v1.0.0...v1.0.1
`brainglobe-segmentation` initial release
This package is a renaming of the now-deprecated brainreg-segment
.
Please use brainglobe-segmentation
instead of the old brainreg-segment
name. This package contains all the same functionality as brainreg-segmentation
.
For more information, please see our blog post.
Users may want to uninstall brainreg-segment
from their environments following this update. If you do so, please also consider doing the following if you make use of any other BrainGlobe tools:
- Update
brainreg
to at least version 1.0.0 - Update
cellfinder
- Remove
brainreg-napari
from your machine - it now comes bundled withbrainreg
versions >=1.0.0.
What's Changed
- Rename to
brainglobe-segmentation
by @willGraham01 in #139
Full Changelog: v0.2.19...v1.0.0
Renaming, please use `brainglobe-segmentation`
This package is being renamed!
Please use brainglobe-segmentation
instead of the old brainreg-segment
name. The functionality of this package it is no longer supported under the old name.
For more information, please see our blog post.
What's Changed
- Set pre-commit autoupdate frequency to monthly by @adamltyson in #128
- Delete .github/workflows/plugin_preview.yml by @adamltyson in #134
- Remove measurement code by @adamltyson in #135
- Migrate to npe2 by @adamltyson in #136
- Standardise use of atlas vs standard space by @adamltyson in #137
- Fix pandas FutureWarning by @adamltyson in #138
- Mark
brainreg-segment
package as deprecated in prep for renaming. by @willGraham01 in #140
New Contributors
- @willGraham01 made their first contribution in #140
Full Changelog: v0.2.18...v0.2.19
v0.2.18
What's Changed
- Update dependency (imlib -> brainglobe-utils) by @adamltyson in #109
- Add tooltips by @adamltyson in #104
- Warn user if data segmented in a different coordinate space by @adamltyson in #107
- Keyword args by @adamltyson in #108
- Refactor tests by @adamltyson in #115
- Add save option on analysis by @adamltyson in #114
Full Changelog: v0.2.17...v0.2.18