[FIX] Address issue when identical .nii and .nii.gz uploaded; default…

… to nii.gz
brainlife · Oct 23, 2023 · 2ea4353 · 2ea4353
1 parent 4a55712
commit 2ea4353
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/handler/preprocess.sh b/handler/preprocess.sh
@@ -109,7 +109,7 @@ else
     echo "Making sure all NIfTI files are in .nii.gz format"
     touch $root/nii_files
     find $root -name "*.nii" > $root/nii_files
-    [ -s $root/nii_files ] && gzip $(cat $root/nii_files)
+    [ -s $root/nii_files ] && gzip --force $(cat $root/nii_files)
 
     echo "processing $root"