[ENH] Better devops and cleanup

.dockerignore

@@ -1,5 +1,2 @@
-ui
-handler
-workdir
-test
-bids-specification
+node_modules
+volumes

.env.dev

@@ -0,0 +1,6 @@
+MONGO_URL=mongodb://mongodb:27017/ezbids
+MONGOOSE_DEBUG=true
+UPLOAD_DIR=/app/volumes/upload
+WORK_DIR=/app/volumes/ezbids-workdir
+HOST=0.0.0.0
+PORT=8082

.gitignore

@@ -1,9 +1,12 @@
 .DS_Store
 node_modules
+volumes/*
+!volumes/.gitkeep
 
 # local env files
 .env.local
 .env.*.local
+.env
 
 # Log files
 npm-debug.log*
@@ -25,7 +28,3 @@ testdata
 barn
 nohup.out
 tsc.log
-
-api/config.json
-
-handler/container/ROBEXv12.linux64.tar.gz

README.md

@@ -98,19 +98,11 @@ brainlife.io is publicly funded and for the sustainability of the project it is
 ### Citations
 We ask that you the following articles when publishing papers that used data, code or other resources created by the brainlife.io community.
 
-1. Levias, D. et al. **In review**
-
-### This repo was bootstrapped by
-
-```
-npm init vite@latest ui2 -- --template vue-ts
-```
+1. Levitas, D. et al. **In review**
 
 ### Development Environment
 
-A local development instance of ezBIDS can be launched by first git cloning this repo, then running `./dev.sh` on a docker enabled machine. When everything is built/running, you should be able to reach the dev instance at http://localhost:3000/
-
-
-
-Copyright © 2022 brainlife.io at University of Texas at Austin
+A local development instance of ezBIDS can be launched by first git cloning this repo, then running `./dev.sh` on a docker enabled machine.
+When everything is built/running, you should be able to reach the dev instance at http://localhost:3000/
 
+Copyright © 2022 brainlife.io at University of Texas at Austin

api/.dockerignore

@@ -0,0 +1 @@
+node_modules

api/Dockerfile

@@ -0,0 +1,17 @@
+FROM node:16
+
+ARG USER=docker
+ARG UID
+ARG GID
+
+RUN groupadd -g "${GID}" ${USER} || true
+RUN useradd --create-home --no-log-init -u "${UID}" -g "${GID}" ${USER} || true
+
+COPY . /app
+RUN chown -R ${UID}:${GID} /app
+WORKDIR /app/api
+RUN npm install
+
+USER ${UID}:${GID}
+
+CMD [ "npm", "run", "dev" ]