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Integrate GARDEL #731

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@chinmaychinara91 chinmaychinara91 commented Aug 2, 2024

[WORK IN PROGRESS. DESCRIPTION WILL BE UPDATED]

About GARDEL: link

Test data: link

  • GARDEL as plugin
  • Automatic sEEG Contact Localization and Labeling using GARDEL (within Brainstorm)
  • Start GARDEL standalone GUI from Brainstorm
  • Create temporary folder for loading things back from GARDEL to Brainstorm subject
  • Once done with GARDEL tool, load data back to Brainstorm

sCt = bst_memory('GetMri', CtFile);
sCt = in_mri_bst(CtFile);
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Would not be better to use bst_memory('LoadMri', MriFile) to avoid reloading the CT file if it's already in memory?

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oh sorry never mind. I just misread it. Yes you are right LoadMri and not GetMri.

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165e5dc merge captures important bug fixes for iEEG Panel based on PR #710

When the user imports a CT file, we can end up with: one file (unprocessed) or, two files (the unprocessed file and the processed file)
- unprocessed file ends with `_volct_raw`
- processed file ends with `_volct'
- exports the imported MRI file and the unprocessed CT file as NIfTI files
- `GARDEL` menu option shows up only if there is an unprocessed CT file present in the node
- `NiiRefMriFile` and `NiiRawCtFile` variables have the full path of the NIfTI files in the tmp directory
…l-integration"

This reverts commit 31a131e, reversing
changes made to 2ce4663.
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