Update flags.py

broadinstitute · Jan 10, 2025 · 8985ef1 · 8985ef1
1 parent e862914
commit 8985ef1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/flags.py b/flags.py
@@ -23,7 +23,7 @@ def assign_flags(self, fail_nocrRNA_check_df, high_raw_ntc_signal_df, rnasep_df,
             for row in QC_score_per_assay_df.itertuples():
                 if row.Index == 'QC3: CPC':
                     for assay in QC_score_per_assay_df.columns: 
-                        row._asdict().get(assay, None)
+                        score = row._asdict().get(assay, None)
                         #score = getattr(row, assay)
                         if score == 0: # CPC test has failed, the assay is invalid
                             invalid_assays.append(assay) # add to invalid assays list