Update v2 rmc task for public data #1332
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Updates the
prepare_v2_regional_missense_constraint
task to work with the data available to the public.The hailtable used for the v2 RMC task to run on production was a slightly older hail table that included both qc'd and non qc'd RMC values. The public data only includes the data that passed qc, with slightly different names. This PR updates the task to use the field names in the public data.