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Split exome and genome frequencies in VA data #1629

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merged 2 commits into from
Sep 17, 2024

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phildarnowsky-broad
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VA data was previously always using exome frequencies if available, genome if not. However, given that this is a general-purpose API, it's hard to say if users will want exomes, genomes, or both for their use cases. Hence, rather than try to make that decision for them, we allow (and require) them now to say which they want in their queries.

VA data was previously always using exome frequencies if available, genome if not. However, given that this is a general-purpose API, it's hard to say if users will want exomes, genomes, or both for their use cases. Hence, rather than try to make that decision for them, we allow (and require) them now to say which they want in their queries.
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@rileyhgrant I think the commit message explains my motivation here OK but LMK if you'd like to dig into more detail.

@@ -124,10 +123,11 @@ type VACohortAlleleFrequency {
This creates a recursive relationship and subcohorts can be further subdivided into more subcohorts.
This enables, for example, the description of different ancestry groups and sexes among those ancestry groups.
"""
subcohortFrequency: [VACohortAlleleFrequency]
subcohortFrequency: [VACohortAlleleFrequencyData]
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note to self: ! here

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lgtm!

@phildarnowsky-broad phildarnowsky-broad merged commit 5f82af5 into main Sep 17, 2024
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@phildarnowsky-broad phildarnowsky-broad deleted the split-va-exome-genome branch September 17, 2024 16:54
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2 participants