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Update strs bw2 20241010#1665

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bw2 wants to merge 38 commits intoupdate_strsbroadinstitute/gnomad-browser:update_strsfrom update-strs-bw2-20241010broadinstitute/gnomad-browser:update-strs-bw2-20241010Copy head branch name to clipboard

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Commits on Jul 16, 2024

• Update STR data pipeline for new data

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• DONTMERGE rig index

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• Update GraphQL schema for STRs to reflect new ES schema

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Commits on Jul 17, 2024

• WIP pop options refactored

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Commits on Jul 22, 2024

• WIP that should be the allele size plot

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• WIP genotype select

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• WIP age dist

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Commits on Jul 24, 2024

• WIP more refactor

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Commits on Jul 25, 2024

• WIP typechecks

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Commits on Jul 26, 2024

• WIP flush any's, flush bugs

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• WIP update query in frontend

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• WIP restoring classification

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• WIP fixing query

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• DONTMERGE nerf reads

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Commits on Jul 29, 2024

• fixup fix ancestry and sex selectors

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• fixup: fix allele size plot when no selected repunit

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Commits on Oct 8, 2024

• Merge branch 'main' into update_strs

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Commits on Oct 10, 2024

• misc. updates to TR page in preparation for new release

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Commits on Oct 30, 2024

• Merge branch 'main' into update-strs

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• renamed 'AncestryGroup' to 'Population' and 'frequnecy' to 'count'

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• reverted variable names to match API

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Commits on Oct 31, 2024

• finished initial implementation of adding colors to histogram

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• renamed ancestryGroupId to populationId to match the main branch

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• updated shortTandemRepeatFactory

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Commits on Nov 4, 2024

• fixup: update snapshots

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Commits on Nov 8, 2024

• added 'Linear: Truncated' scale option

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• fixed logic for switching to 'linear-truncated' scale when color-by selected

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• Fixed STR pages for loci without a disease association

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• Updated histogram colors

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Commits on Nov 20, 2024

• WIP beginning of STR reads fix

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Commits on Dec 2, 2024

• WIP stackedbar plot

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Commits on Dec 3, 2024

• Prevent use of log scale with broken-down STR data

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• Add legend to allele size plot

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Commits on Dec 6, 2024

• WIP tooltips

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Commits on Dec 9, 2024

• fixup: un-rig API query location

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• fixup: fixed order for keys

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Commits on Dec 10, 2024

• updated Q legend labels

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• added more options to y-scale drop down

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