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klaricch committed Jan 31, 2025
1 parent 0b94a0e commit 35ec0d3
Showing 1 changed file with 3 additions and 4 deletions.
7 changes: 3 additions & 4 deletions gnomad_qc/v5/data_ingestion/federated_validity_checks.py
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import argparse
import json
import logging
from jsonschema import validate
from jsonschema.exceptions import ValidationError

from typing import List

import hail as hl
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)
from gnomad.resources.grch38.gnomad import public_release
from gnomad.utils.reference_genome import get_reference_genome
from jsonschema import validate
from jsonschema.exceptions import ValidationError

from gnomad_qc.v5.resources.basics import get_logging_path
from gnomad_qc.v5.configs.validity_inputs_schema import schema
from gnomad_qc.v5.resources.basics import get_logging_path

logging.basicConfig(format="%(levelname)s (%(name)s %(lineno)s): %(message)s")
logger = logging.getLogger("federated_validity_checks")
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