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85 Open 42 Closed
85 Open 42 Closed
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Issues list

Understand subclone fraction results
#134 opened May 7, 2024 by jgarces02
PON error
#133 opened Apr 29, 2024 by gagank4911
Different tumor fractions estimated with different runs for the same samples
#132 opened Apr 3, 2024 by Urja25
Running ichorCNA on cell free mitochondrial DNA
#131 opened Mar 29, 2024 by Ons14
Could ichorCNA be used for low-pass whole genome sequencing of gDNA？
#128 opened Nov 27, 2023 by feihongloveworld
Plotting error
#127 opened Sep 18, 2023 by IanCodes
4
ISSUES WITH LOGR INFINITE VALUE
#126 opened Sep 5, 2023 by Mariamamghar1
2
Scope of application of ichorCNA?
#125 opened Aug 30, 2023 by h170607
1
Missing bins on chr19 for hg38 but not hg19
#124 opened Jul 14, 2023 by zztin
Missing bin on some regions
#123 opened Jul 13, 2023 by npt-vinh
Samples with 0% Tumor, but chromosome deletions?
#122 opened Jun 14, 2023 by Timster28
The subclonal fraction (fraction of tumor-derived DNA that is subclonal) is 0.446 but tumor fraction is 0
#121 opened Mar 25, 2023 by paulhtyang
Error in .order_seqlevels(chrom_sizes[, "chrom"]) :
#120 opened Feb 28, 2023 by ekushele
Add config option for people with color vision defficiency
#119 opened Feb 20, 2023 by moldovannorbert
1
Are duplicated records in BAM file counted or not?
#118 opened Feb 17, 2023 by zztin
1
Rumtime error (Error in lambdas[, , i] <- na.omit(param$lambda) : incorrect number of subscripts)
#117 opened Feb 8, 2023 by yaotianran
7
Error while using a BED file
#116 opened Dec 6, 2022 by mokhouja
Final segmentation from alternate ichorCNA solutions
#115 opened Nov 11, 2022 by shahmj
1
PON- missing .rds metadata columns
#114 opened Sep 20, 2022 by fmadrid2
correctedDepth.txt File interval missing
#113 opened Aug 18, 2022 by zhangyafeng1
Failed to connect to ftp.ncbi.nlm.nih.gov
#112 opened Aug 16, 2022 by paulhtyang
1
Is cutoff 0.03 suitable for cfDNA 5hmC sequencing？
#111 opened Jun 10, 2022 by hxlei
PON - unable to find an inherited method for function ‘seqinfo’ for signature ‘"data.table"’
#110 opened May 25, 2022 by EvoMedLab
2
map_hg38_1k.wig
#109 opened Apr 15, 2022 by baimianer
2
Intuitive understanding of txnE and txnStrength
#108 opened Feb 4, 2022 by ilykos
1
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