Merge pull request #25 from brianjohnhaas/devel

updated example data Former-commit-id: 4131ab2 Former-commit-id: f5d0f89
broadinstitute · May 11, 2018 · ce9ee66 · ce9ee66
2 parents 9b953d7 + ee62171
commit ce9ee66
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diff --git a/example/.DS_Store b/example/.DS_Store
diff --git a/example/__run_example.sh b/example/__run_example.sh
@@ -1,11 +1,10 @@
 # assumes infercnv is installed.
 
 ../scripts/inferCNV.R \
-    --delim " " \
-    --ref_groups "1:235,236:280" \
+    --ref_groups "1:50,51:95" \
     --cutoff 1 \
-    --noise_filter 0.25 \
+    --noise_filter 0.2 \
     --output_dir quickstart \
     --vis_bound_threshold " -1,1" \
-    --ref example_refs.txt \
-      example_expression.txt example_genomic_positions.txt
+    --ref normal_cells.csv \
+      oligodendroglioma.tp100k.expr.matrix gencode_v19_gene_pos.txt