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@gwaybio gwaybio released this 05 May 21:25
· 13 commits to master since this release
v2
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Learn about vigilant mode.

We received three reviews for this paper, which required additional analyses, clarifying text in figures, and paper restructuring. This release captures all these changes.

What's Changed

  • [Response to Review] Add PCA supplementary figure by @gwaygenomics in #54
  • [Response to Review] Coefficient of variation supplementary figure by @gwaygenomics in #55
  • [Response to Review] Adding dose independent null distribution comparisons by @gwaygenomics in #56
  • [Response to Review] Discretize panels in figure 1 and sup fig 3 by @gwaygenomics in #57
  • [Response to Review] Adding example distributions: Cell Painting Images and L1000 by @gwaygenomics in #58
  • [Response to Review] Add target and pathway labels for prediction by @gwaygenomics in #59
  • [Response to Review] Update MOA labels in UMAP visualization by @gwaygenomics in #61
  • [Response to Review] Adding precision analysis for MOAs and Targets by @gwaygenomics in #62
  • [Response to Review] Comparing cell count, reproducibility, and cell death predictions by @gwaygenomics in #63
  • [Response to Review] Adding visualization of MOAs that are not captured by either assay by @gwaygenomics in #64
  • [Response to Review] Edge well filter QC percent strong by @gwaygenomics in #65
  • [Response to Review] Update figures to clarify Spearman and add percent replicating explainer by @gwaygenomics in #66
  • [Response to Review] Filter GO terms for ML analysis by @gwaygenomics in #67
  • [Response to Review] Add dose-independent percent matching and average precision experiments by @gwaygenomics in #68
  • [Response to Review] Adding MOA matching column to figure 2 with same compounds by @gwaygenomics in #69
  • [Response to Reviewers] Update supplementary tables by @gwaygenomics in #70
  • Do not track all csv files via git lfs by @gwaygenomics in #71
  • [Response to Review] Equal weighting ensemble by @gwaygenomics in #72
  • [Response to Reviewers] Update Figure 4F - ORA GO term display by @gwaygenomics in #73
  • [Response to Review] Update Figure 5 (Deep learning analysis) by @gwaygenomics in #74
  • [Response to Reviewers] Update all figure names by @gwaygenomics in #75

Full Changelog: v1...v2

Contributors

gwaybio
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