Releases: broadinstitute/warp
Releases · broadinstitute/warp
UltimaGenomicsWholeGenomeGermline_develop
1.1.3
2024-12-05 (Date of Last Commit)
- Updated the name of the output for ReblockGVCFs; this does not affect this pipeline
ReblockGVCF_develop
2.4.0
2024-12-05 (Date of Last Commit)
- Updated output names for ReblockGVCF workflow from output_vcf and output_vcf_index to reblocked_gvcf and reblocked_gvcf_index respectively
BroadInternalUltimaGenomics_develop
1.1.3
2024-12-05 (Date of Last Commit)
- Updated the name of the output for ReblockGVCFs; this does not affect this pipeline
atac_v2.5.3
2.5.3
2024-11-22 (Date of Last Commit)
- Updated the warp-tools docker; this update changes the way gene_names are identified when creating gene expression h5ad files; does not impact ATAC workflow
SlideSeq_v3.4.7
3.4.7
2024-12-3 (Date of Last Commit)
- Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR; this does not affect the outputs of the pipeline
PairedTag_v1.8.4
1.8.4
2024-12-3 (Date of Last Commit)
- Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR
Optimus_v7.8.4
7.8.4
2024-12-3 (Date of Last Commit)
- Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR
Multiome_v5.9.3
5.9.3
2024-12-3 (Date of Last Commit)
- Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR
MultiSampleSmartSeq2SingleNucleus_v2.0.6
2.0.6
2024-11-15 (Date of Last Commit)
- Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR; this does not affect the outputs of the pipeline
BuildIndices_v3.1.0
3.1.0
2024-11-26 (Date of Last Commit)
- Added metadata.txt file as an output to the pipeline