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Releases: broadinstitute/warp

UltimaGenomicsWholeGenomeGermline_develop

08 Jan 16:52
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1.1.3

2024-12-05 (Date of Last Commit)

  • Updated the name of the output for ReblockGVCFs; this does not affect this pipeline

ReblockGVCF_develop

08 Jan 16:52
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ReblockGVCF_develop Pre-release
Pre-release

2.4.0

2024-12-05 (Date of Last Commit)

  • Updated output names for ReblockGVCF workflow from output_vcf and output_vcf_index to reblocked_gvcf and reblocked_gvcf_index respectively

BroadInternalUltimaGenomics_develop

08 Jan 16:52
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Pre-release

1.1.3

2024-12-05 (Date of Last Commit)

  • Updated the name of the output for ReblockGVCFs; this does not affect this pipeline

atac_v2.5.3

16 Dec 15:40
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2.5.3

2024-11-22 (Date of Last Commit)

  • Updated the warp-tools docker; this update changes the way gene_names are identified when creating gene expression h5ad files; does not impact ATAC workflow

SlideSeq_v3.4.7

16 Dec 15:40
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3.4.7

2024-12-3 (Date of Last Commit)

  • Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR; this does not affect the outputs of the pipeline

PairedTag_v1.8.4

16 Dec 15:40
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1.8.4

2024-12-3 (Date of Last Commit)

  • Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR

Optimus_v7.8.4

16 Dec 15:40
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7.8.4

2024-12-3 (Date of Last Commit)

  • Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR

Multiome_v5.9.3

16 Dec 15:40
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5.9.3

2024-12-3 (Date of Last Commit)

  • Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR

MultiSampleSmartSeq2SingleNucleus_v2.0.6

16 Dec 15:40
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2.0.6

2024-11-15 (Date of Last Commit)

  • Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR; this does not affect the outputs of the pipeline

BuildIndices_v3.1.0

16 Dec 15:39
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3.1.0

2024-11-26 (Date of Last Commit)

  • Added metadata.txt file as an output to the pipeline