ENH-SEA021 #5
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| clean-all: | ||
| rm -f realtime_rawnc/* | ||
| rm -f L1-timeseries/* | ||
| rm -f L1-profiles/* | ||
| rm -f L2-gridfiles/* | ||
| rm -f figs/* | ||
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,343 @@ | ||
| metadata: | ||
| # https://github.com/ioos/ioosngdac/wiki/NGDAC-NetCDF-File-Format-Version-2 | ||
| acknowledgement: Funding from Fisheries and Oceans Canada, Canadian Foundation | ||
| for Innovation, BC Knowledge Development Fund | ||
| comment: "Explorer Seamount cruise on Tully" | ||
| contributor_name: James Pegg, Jody Klymak, Tetjana Ross | ||
| contributor_role: Lead Technician, Principal Investigator, Co-PI | ||
| creator_email: [email protected] | ||
| creator_name: Jody Klymak | ||
| creator_url: http://cproof.uvic.ca | ||
| # date_created etc: added automatically | ||
| # numbers must be eenclosed by strings so YAML keeps as strings | ||
| deployment_id: '1' | ||
| deployment_name: 'dfo-sea021-tester' | ||
| deployment_start: '2019-07-18' | ||
| deployment_end: '2019-12-30' | ||
| format_version: IOOS_Glider_NetCDF_v2.0.nc | ||
| # id filled automatically... | ||
| glider_name: dfo-sea021 | ||
| glider_serial: '021' | ||
| glider_model: SeaExplorer | ||
| glider_instrument_name: seaexplorer | ||
| glider_wmo: '999999' | ||
| institution: C-PROOF | ||
| keywords: "AUVS, Autonomous Underwater Vehicles, Oceans, Ocean Pressure, | ||
| Water Pressure, Oceans, Ocean Temperature, Water Temperature, | ||
| Oceans, Salinity/Density, Conductivity, Oceans, | ||
| Salinity/Density, Density, Oceans, Salinity/Density, Salinity" | ||
| keywords_vocabulary: GCMD Science Keywords | ||
| license: "This data may be redistributed and used without restriction or | ||
| warranty" | ||
| metadata_link: "https://cproof.uvic.ca" | ||
| Metadata_Conventions: CF-1.6, Unidata Dataset Discovery v1.0 | ||
| naming_authority: "ca.uvic.cproof" | ||
| platform_type: "SeaExplorer Glider" | ||
| processing_level: "Data provided as is with no expressed or implied | ||
| assurance of quality assurance or quality control." | ||
| project: ExplorerSeamount19 | ||
| project_url: http://cproof.uvic.ca | ||
| publisher_email: [email protected] | ||
| publisher_name: Jody Klymak | ||
| publisher_url: http://cproof.uvic.ca | ||
| references: cproof toolbox URL | ||
| # https://www.nodc.noaa.gov/General/NODC-Archive/seanamelist.txt | ||
| sea_name: BC Coastal Waters | ||
| source: Observational data from a profiling glider. | ||
| standard_name_vocabulary: CF STandard Name Table v49 | ||
| summary: Short deployment off Tully near Explorer Seamount. | ||
| transmission_system: IRRIDIUM | ||
| wmo_id: "999999" | ||
|
|
||
|
|
||
| glider_devices: | ||
| pressure: | ||
| make: Micron | ||
| model: Pressure | ||
| serial: '104702' | ||
| ctd: | ||
| make: Seabird | ||
| model: GPCTD | ||
| serial: '0278' | ||
| long_name: Seabird SlocumCTD | ||
| make_model: Seabird SlocumCTD | ||
| factory_calibrated: "Yes" | ||
| calibration_date: "02/11/2018" | ||
| calibration_report: " " | ||
| comment: " " | ||
| optics: | ||
| make: Wetlabs | ||
| model: FLBBCDSLC | ||
| serial: '4741' | ||
| oxygen: | ||
| make: AROD_FT | ||
| model: Optode4831 | ||
| serial: '0022' | ||
|
|
||
| # map between glider variables and netcdf variables. This shouldn't | ||
| # change too much. | ||
| netcdf_variables: | ||
| # Time and Place: | ||
| time: | ||
| source: time | ||
| long_name: Time | ||
| standard_name: time | ||
| calendar: gregorian | ||
| units: seconds since 1970-01-01T00:00:00Z | ||
| axis: T | ||
| observation_type: "measured" | ||
| coordinates: time depth latitude longitude | ||
|
|
||
| latitude: | ||
| source: NAV_LATITUDE | ||
| long_name: latitude | ||
| standard_name: latitude | ||
| units: degrees_north | ||
| axis: Y | ||
| coordinates: time depth latitude longitude | ||
| conversion: nmea2deg | ||
| comment: "Estimated between surface fixes" | ||
| observation_type: measured | ||
| platform: platform | ||
| reference: WGS84 | ||
| valid_max: "90.0" | ||
| valid_min: "-90.0" | ||
| coordinate_reference_frame: urn:ogc:crs:EPSG::4326 | ||
|
|
||
| longitude: | ||
| source: NAV_LONGITUDE | ||
| long_name: longitude | ||
| standard_name: longitude | ||
| units: degrees_east | ||
| axis: X | ||
| coordinates: time depth latitude longitude | ||
| conversion: nmea2deg | ||
| comment: "Estimated between surface fixes" | ||
| observation_type: measured | ||
| platform: platform | ||
| reference: WGS84 | ||
| valid_max: "180.0" | ||
| valid_min: "-180.0" | ||
| coordinate_reference_frame: urn:ogc:crs:EPSG::4326 | ||
|
|
||
| heading: | ||
| source: Heading | ||
| long_name: glider heading angle | ||
| standard_name: platform_orientation | ||
| units: rad | ||
| coordinates: time depth latitude longitude | ||
|
|
||
| pitch: | ||
| source: Pitch | ||
| long_name: glider pitch angle | ||
| standard_name: platform_pitch_angle | ||
| units: rad | ||
| coordinates: time depth latitude longitude | ||
|
|
||
| roll: | ||
| source: Roll | ||
| long_name: glider roll angle | ||
| standard_name: platform_roll_angle | ||
| units: rad | ||
| coordinates: time depth latitude longitude | ||
|
|
||
| # data parameters | ||
| conductivity: | ||
| source: GPCTD_CONDUCTIVITY | ||
| long_name: water conductivity | ||
| standard_name: sea_water_electrical_conductivity | ||
| units: S m-1 | ||
| coordinates: time depth latitude longitude | ||
| instrument: instrument_ctd | ||
| valid_min: "0." | ||
| valid_max: "10." | ||
| observation_type: "measured" | ||
| accuracy: "0.0003" | ||
| precision: "0.0001" | ||
| resolution: "0.00002" | ||
|
|
||
| temperature: | ||
| source: GPCTD_TEMPERATURE | ||
| long_name: water temperature | ||
| standard_name: sea_water_temperature | ||
| units: Celsius | ||
| coordinates: time depth latitude longitude | ||
| instrument: instrument_ctd | ||
| valid_min: "-5" | ||
| valid_max: "50" | ||
| observation_type: "measured" | ||
| accuracy: "0.002" | ||
| precision: "0.001" | ||
| resolution: "0.0002" | ||
|
|
||
| pressure: | ||
| source: GPCTD_PRESSURE | ||
| long_name: water pressure | ||
| standard_name: sea_water_pressure | ||
| units: dbar | ||
| coordinates: time depth latitude longitude | ||
| valid_min: "0" | ||
| valid_max: "2000" | ||
| positive: "down" | ||
| reference_datum: "sea-surface" | ||
| instrument: "instrument_ctd" | ||
| observation_type: "measured" | ||
| accuracy: "1" | ||
| precision: "2" | ||
| resolution: "0.02" | ||
| comment: "ctd pressure sensor" | ||
|
|
||
| # optics: | ||
| chlorophyll: | ||
| source: FLBBCD_CHL_SCALED | ||
| long_name: chlorophyll | ||
| standard_name: concentration_of_chlorophyll_in_sea_water | ||
| units: mg m-3 | ||
| coordinates: time depth latitude longitude | ||
|
|
||
| cdom: | ||
| source: FLBBCD_CDOM_SCALED | ||
| long_name: CDOM | ||
| units: ppb | ||
| coordinates: time depth latitude longitude | ||
|
|
||
| backscatter_700: | ||
| source: FLBBCD_BB_700_SCALED | ||
| long_name: 700 nm wavelength backscatter | ||
| units: "1" | ||
| coordinates: time depth latitude longitude | ||
|
|
||
| # Oxygen | ||
| oxygen_concentration: | ||
| source: GPCTD_DOF | ||
| long_name: oxygen concentration | ||
| standard_name: mole_concentration_of_dissolved_molecular_oxygen_in_sea_water | ||
| units: umol l-1 | ||
| coordinates: time depth latitude longitude | ||
|
There was a problem hiding this comment. Perhaps swap the units for "unknown" if we're not sure what the oxygen is doing here |
||
|
|
||
| # derived water speed: | ||
| # water_velocity_eastward: | ||
| # source: m_final_water_vx | ||
| # long_name: mean eastward water velocity in segment | ||
| # standard_name: barotropic_eastward_sea_water_velocity | ||
| # units: m s-1 | ||
| # coordinates: time depth latitude longitude | ||
| # | ||
| # water_velocity_northward: | ||
| # source: m_final_water_vy | ||
| # long_name: mean northward water velocity in segment | ||
| # standard_name: barotropic_northward_sea_water_velocity | ||
| # units: m s-1 | ||
| # coordinates: time depth latitude longitude | ||
|
|
||
| profile_variables: | ||
| # variables for extract_L1timeseries_profiles processing step... | ||
| profile_id: | ||
| comment: Sequential profile number within the trajectory. This value is unique in each file that is part of a single trajectory/deployment. | ||
| long_name: 'Profile ID' | ||
| valid_max: '2147483647' | ||
| valid_min: '1' | ||
|
|
||
| profile_time: | ||
| comment: Timestamp corresponding to the mid-point of the profile | ||
| long_name: Profile Center Time | ||
| observation_type: calculated | ||
| platform: platform | ||
| standard_name: time | ||
| units: seconds since 1970-01-01T00:00:00Z | ||
|
|
||
| profile_time_start: | ||
| comment: Timestamp corresponding to the start of the profile | ||
| long_name: Profile Start Time | ||
| observation_type: calculated | ||
| platform: platform | ||
| standard_name: time | ||
| units: seconds since 1970-01-01T00:00:00Z | ||
|
|
||
| profile_time_end: | ||
| comment: Timestamp corresponding to the end of the profile | ||
| long_name: Profile End Time | ||
| observation_type: calculated | ||
| platform: platform | ||
| standard_name: time | ||
| units: seconds since 1970-01-01T00:00:00Z | ||
|
|
||
| profile_lat: | ||
| comment: Value is interpolated to provide an estimate of the latitude at the mid-point of the profile | ||
| long_name: Profile Center Latitude | ||
| observation_type: calculated | ||
| platform: platform | ||
| standard_name: latitude | ||
| units: degrees_north | ||
| valid_max: "90.0" | ||
| valid_min: "-90.0" | ||
|
|
||
| profile_lon: | ||
| comment: Value is interpolated to provide an estimate of the latitude at the mid-point of the profile | ||
| long_name: Profile Center Longitude | ||
| observation_type: calculated | ||
| platform: platform | ||
| standard_name: longitude | ||
| units: degrees_east | ||
| valid_max: "180.0" | ||
| valid_min: "-180.0" | ||
|
|
||
| u: | ||
| comment: The depth-averaged current is an estimate of the net current measured while the glider is underwater. The value is calculated over the entire underwater segment, which may consist of 1 or more dives. | ||
| long_name: Depth-Averaged Eastward Sea Water Velocity | ||
| observation_type: calculated | ||
| platform: platform | ||
| standard_name: eastward_sea_water_velocity | ||
| units: m s-1 | ||
| valid_max: "10.0" | ||
| valid_min: "-10.0" | ||
|
|
||
| v: | ||
| comment: The depth-averaged current is an estimate of the net current measured while the glider is underwater. The value is calculated over the entire underwater segment, which may consist of 1 or more dives. | ||
| long_name: Depth-Averaged Northward Sea Water Velocity | ||
| observation_type: calculated | ||
| platform: platform | ||
| standard_name: northward_sea_water_velocity | ||
| units: m s-1 | ||
| valid_max: "10.0" | ||
| valid_min: "-10.0" | ||
|
|
||
| lon_uv: | ||
| comment: Not computed | ||
| long_name: Longitude | ||
| observation_type: calculated | ||
| platform: platform | ||
| standard_name: longitude | ||
| units: degrees_east | ||
| valid_max: "180.0" | ||
| valid_min: "-180.0" | ||
|
|
||
| lat_uv: | ||
| comment: Not computed | ||
| long_name: Latitude | ||
| observation_type: calculated | ||
| platform: platform | ||
| standard_name: latitude | ||
| units: degrees_north | ||
| valid_max: "90.0" | ||
| valid_min: "-90.0" | ||
|
|
||
| time_uv: | ||
| comment: Not computed | ||
| long_name: Time | ||
| standard_name: time | ||
| calendar: gregorian | ||
| units: seconds since 1970-01-01T00:00:00Z | ||
| observation_type: calculated | ||
|
|
||
| instrument_ctd: | ||
| comment: pumped CTD | ||
| calibration_date: "2017-12-24" | ||
| calibration_report: 20171224_Seabird_SlocumCTD_SN9446_calibrations.pdf | ||
| comment: pumped CTD | ||
| factory_calibrated: "yes" | ||
| long_name: Seabird Glider Payload CTD | ||
| make_model: Seabird GPCTD | ||
| platform: platform | ||
| serial_number: "9446" | ||
| type: platform | ||
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,33 @@ | ||
| figdir: './figs/' | ||
| starttime: '2019-06-13T13:00' | ||
| timeseries: | ||
| temperature: "True" | ||
| salinity: "True" | ||
| oxygen_concentration: "True" | ||
| backscatter_700: "True" | ||
| chlorophyll: "True" | ||
| cdom: "True" | ||
| # 'RdBu_r', 'viridis', 'RdYlBu', 'Greens' | ||
| pcolor: | ||
| ncols : 2 | ||
| density_cont_interval : 0.5 | ||
| vars: | ||
| temperature: | ||
| cmap: 'RdBu_r' | ||
| salinity: | ||
| cmap: 'viridis' | ||
| vmin: 30.5 | ||
| vmax: 34.5 | ||
| oxygen_concentration: | ||
| cmap: 'RdYlBu' | ||
| vmin: -300 | ||
| vmax: 500 | ||
| chlorophyll: | ||
| cmap: 'Greens' | ||
| vmin: 0 | ||
| vmax: 8 | ||
| cdom: | ||
| cmap: 'BuPu' | ||
| vmin: 1.2 | ||
| backscatter_700: | ||
| cmap: 'hot_r' |
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Will need to make these all L0 to match the rest of the repo