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@calacademy-research

California Academy of Sciences, Institute for Biodiversity Science & Sustainability

Public repositories for IBSS projects

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  1. minibar minibar Public

    Dual barcode and primer demultiplexing for MinION sequenced reads

    Python 35 5

  2. antcat antcat Public

    World Catalog of Ants

    Ruby 19 8

  3. RAxML_Astral_trees RAxML_Astral_trees Public

    This project generates Astral-III species trees from gene trees generated from RAxML using UCE data generated by the Phyluce pipeline. Then runs an Astral III analysis.

    Shell 8 2

  4. BLATq BLATq Public

    blatq is a modified version of BLAT—The BLAST-Like Alignment Tool to allow direct use of fastq files

    C 4 1

  5. antweb antweb Public

    AntWeb is the world's largest online database of images, specimen records, and natural history information on ants. It is community driven and open to contribution from anyone with specimen records…

    Java 4

  6. COMB COMB Public

    C O M B

    R 4 4

Repositories

Showing 10 of 51 repositories
  • web-asset-importer Public

    Image client used in conjunction with web-asset-server to process images/data into image server, and specify databases.

    calacademy-research/web-asset-importer’s past year of commit activity
    Python 1 0 0 1 Updated Nov 26, 2024
  • picturae_csv_parser Public

    stand alone program , used to QC csvs ready for specify import from picturae, nfn and digileap supplied data

    calacademy-research/picturae_csv_parser’s past year of commit activity
    Python 1 0 0 1 Updated Nov 22, 2024
  • cas-web-asset-server Public Forked from specify/web-asset-server

    Sample attachment server implementation for Specify.

    calacademy-research/cas-web-asset-server’s past year of commit activity
    Python 2 13 0 0 Updated Nov 20, 2024
  • metadata_tools Public

    utility package for writing and reading image metadata

    calacademy-research/metadata_tools’s past year of commit activity
    Python 0 0 0 0 Updated Oct 31, 2024
  • assembly_etc Public
    calacademy-research/assembly_etc’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Oct 19, 2024
  • bioawk.CAS Public

    extensions to heng li's bioawk

    calacademy-research/bioawk.CAS’s past year of commit activity
    C 0 MIT 0 0 0 Updated Oct 19, 2024
  • COMB Public

    C O M B

    calacademy-research/COMB’s past year of commit activity
    R 4 Apache-2.0 4 18 1 Updated Oct 3, 2024
  • antweb Public

    AntWeb is the world's largest online database of images, specimen records, and natural history information on ants. It is community driven and open to contribution from anyone with specimen records, natural history comments, or images.

    calacademy-research/antweb’s past year of commit activity
    Java 4 0 0 6 Updated Sep 29, 2024
  • color_finder Public

    Can find % colors in image based on RGB or HSV values. Can be used for basic image sorting by color.

    calacademy-research/color_finder’s past year of commit activity
    0 0 0 0 Updated Sep 28, 2024
  • publications_finder Public

    A tool to aggregate institutional publications, powered by the OpenAlex API.

    calacademy-research/publications_finder’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 2 0 Updated Sep 27, 2024
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