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pipeline cheatsheet #16

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tavareshugo opened this issue May 31, 2022 · 1 comment
Open

pipeline cheatsheet #16

tavareshugo opened this issue May 31, 2022 · 1 comment
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enhancement New feature or request priority

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@tavareshugo
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Write a cheatsheet page that summarises the steps for generating the consensus assembly.

Maybe this could be written as a sort of protocol:

  • Before you start:
    • type of data (nanopore or illumina)
    • artic primer version used
    • nanopore: pore, device name, caller version (for medaka models)
    • check software and nextflow config files
  • Steps:
    • commands to run the pipeline
    • downstream analysis examples (e.g. phylogenies)
@tavareshugo tavareshugo added the enhancement New feature or request label Jun 10, 2022
@tavareshugo
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this can also serve as a template worksheet for a shorter in-person training

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