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debug #68

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debug 
wrong spell 'sucess'
@xcpanda
xcpanda authored Apr 26, 2022
commit 5d1060e7ad631969027924bc5624805ffcccd77f
6 changes: 3 additions & 3 deletions build/opt-build.sh
View file
Original file line number Diff line number Diff line change
@@ -50,7 +50,7 @@ export PERL5LIB=`echo $INST_PATH/lib/perl5:$PERL5LIB | perl -pe 's/:\$//;'`
set -u

## k8 javascript client for bwakit
if [ ! -e $SETUP_DIR/k8.sucess ]; then
if [ ! -e $SETUP_DIR/k8.success ]; then
curl -sSL --retry 10 -o distro.tar.bz2 https://github.com/attractivechaos/k8/releases/download/${VER_K8}/k8-${VER_K8}.tar.bz2
rm -rf distro/*
tar --strip-components 1 -C distro -xjf distro.tar.bz2
@@ -61,7 +61,7 @@ if [ ! -e $SETUP_DIR/k8.sucess ]; then
fi

## add relevant script from bwakit
if [ ! -e $SETUP_DIR/bwakit.sucess ]; then
if [ ! -e $SETUP_DIR/bwakit.success ]; then
# slight hack to make this executable
echo "#!$INST_PATH/bin/k8" > $INST_PATH/bin/bwa-postalt
curl -sSL https://raw.githubusercontent.com/lh3/bwa/${VER_BWA}/bwakit/bwa-postalt.js >> $INST_PATH/bin/bwa-postalt
@@ -71,7 +71,7 @@ fi

## biobambam2
BB_INST=$INST_PATH/biobambam2
if [ ! -e $SETUP_DIR/bbb2.sucess ]; then
if [ ! -e $SETUP_DIR/bbb2.success ]; then
curl -sSL --retry 10 -o distro.tar.xz $BBB2_URL
mkdir -p $BB_INST
tar --strip-components 3 -C $BB_INST -Jxf distro.tar.xz