mtraceR is an R package to analyse migration-n output
Install the package from version control from within R:
library(devtools)
install_github("carlopacioni/mtraceR")
If you are on Windows and have not used devtools before, then you have to
download the Rtools executable file from CRAN webpage and run it. devtools can
be installed from within R with
install.packages("devtools")
This is a development version. Functions arguments and their implementation may change with no warnings. Limited testing has been conducted with migrate-n outputs from sequence and microsatellite data only.
Use help(package = "mtraceR") to see the documentations available. For help on specific functions use ?function_name, where function_name is the name of the function you are seeking information for.
A short tutorial can also be downloaded as PDF.
If you use mtraceR, please cite:
Pacioni C, Hunt H, Allentoft ME, et al. (2015) Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial. Molecular Ecology, 24, 5813-5828.