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update ep4 removed R materials
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ggrimes committed Apr 25, 2024
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Expand Up @@ -290,24 +290,6 @@ workflow {
}
```

```groovy
//process_rscript.nf
nextflow.enable.dsl=2
process RSTUFF {
script:
"""
#!/usr/bin/env Rscript
library("ShortRead")
countFastq(dirPath="data/yeast/reads/ref1_1.fq.gz")
"""
}
workflow {
RSTUFF()
}
```

This allows the use of a different programming languages which may better fit a particular job. However, for large chunks of code it is suggested to save them into separate files and invoke them from the process script.

## Associated scripts
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