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This PR is to track the conversion progress of all auditory_fear_conditioning sessions

  • Add convert_all_sessions.py to handle the conversion of all AFC sessions to NWB format. This script includes logging, error handling, and the ability to save conversion results to a CSV file.

  • Move the _convert_ffii_to_avi function from convert_session.py to utils/utils.py and renamed it to convert_ffii_to_avi to improve consistency within the repo

  • Refactored the session_to_nwb function to accept nwbfile_path instead of output_dir_path

  • Convert all sessions

  • Document errors

  • Upload to EMBER

@weiglszonja weiglszonja marked this pull request as draft May 26, 2025 13:56
# Conflicts:
#	src/kind_lab_to_nwb/rat_behavioural_phenotyping_2025/auditory_fear_conditioning/convert_session.py
# Conflicts:
#	src/kind_lab_to_nwb/rat_behavioural_phenotyping_2025/utils/utils.py
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