Bump deploy-pages GHA version #159
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| on: | |
| pull_request: | |
| push: | |
| branches: [main, master] | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| # Required for OIDC access to S3 | |
| permissions: | |
| id-token: write | |
| contents: read | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Setup R dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr | |
| needs: coverage | |
| - name: Prepare PTAXSIM database | |
| id: prep_ptaxsim_db | |
| uses: ./.github/actions/prepare-ptaxsim | |
| with: | |
| ASSUMED_ROLE: ${{ secrets.AWS_IAM_ROLE_TO_ASSUME_ARN }} | |
| - name: Set PTAXSIM database path | |
| run: echo "PTAXSIM_DB_PATH=${{ steps.prep_ptaxsim_db.outputs.PTAXSIM_DB_DIR }}/ptaxsim.db" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Test coverage | |
| run: | | |
| covr::codecov( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") | |
| ) | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/package |