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@ccb-hms

Core for Computational Biomedicine

Harvard Medical School

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  1. BioPlex BioPlex Public

    R-side access to PPI data from Gygi lab

    R 6 2

  2. ontology-mapper ontology-mapper Public

    a tool for mapping free-text descriptions of entities to ontology terms

    Python 19 4

  3. HuBMAPy HuBMAPy Public

    A package to query the HuBMAP Human Reference Atlas Ontology

    Python 1 3

  4. MerfishData MerfishData Public

    Collection of public MERFISH datasets

    R 1 2

  5. nhanes-database nhanes-database Public

    R 6 5

  6. computervision computervision Public

    Everything to get started with computer vision

    Jupyter Notebook 6 1

Repositories

Showing 10 of 87 repositories
  • ProteinGymR Public

    Programmatic access to ProteinGym datasets in R/Bioconductor

    ccb-hms/ProteinGymR’s past year of commit activity
    R 0 0 7 0 Updated Mar 14, 2025
  • AutomaticSpeechRecognition Public

    Examples to help you get up and running with locally-hosted ASR models.

    ccb-hms/AutomaticSpeechRecognition’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 13, 2025
  • computervision Public

    Everything to get started with computer vision

    ccb-hms/computervision’s past year of commit activity
    Jupyter Notebook 6 CC-BY-4.0 1 1 0 Updated Mar 11, 2025
  • af3 Public Forked from NIH-HPC/af3

    Biowulf alphhafold3 wrapper

    ccb-hms/af3’s past year of commit activity
    Python 0 1 0 0 Updated Mar 11, 2025
  • cadence Public

    A project for creating meeting schedules.

    ccb-hms/cadence’s past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 0 0 Updated Mar 6, 2025
  • scDiagnostics Public

    Diagnostic functions to assess the quality of cell type annotations in single-cell RNA-seq data

    ccb-hms/scDiagnostics’s past year of commit activity
    R 9 2 7 0 Updated Mar 2, 2025
  • BioPlex_abundance_Shiny Public

    Shiny App for protein and PTM abundance analysis

    ccb-hms/BioPlex_abundance_Shiny’s past year of commit activity
    R 0 0 0 0 Updated Feb 13, 2025
  • optimal-transport Public

    A compilation of notes, slides, references and code on the topic of optimal transport.

    ccb-hms/optimal-transport’s past year of commit activity
    R 0 0 0 0 Updated Jan 28, 2025
  • alphafold3_tools Public Forked from cddlab/alphafold3_tools

    Toolkit for alphafold3 input and output files

    ccb-hms/alphafold3_tools’s past year of commit activity
    Python 0 BSD-2-Clause 8 0 0 Updated Jan 25, 2025
  • AlphaMissenseR Public Forked from mtmorgan/AlphaMissenseR

    Accessing AlphaMissense Data Resources in R

    ccb-hms/AlphaMissenseR’s past year of commit activity
    R 0 2 2 0 Updated Jan 11, 2025
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