CH4_microbiome_analyses

Code for analysis of microbiome for methane PhD chapter

Please cite the below when using any data or code here:

Keneally, C., Southgate, M., Chilton, D., Gaget, V., Welsh, D.T., Mosley, L., Erler, D.V., Kidd, S.P. and Brookes, J. (2024), Organic matter accumulation drives methylotrophic methanogenesis and microbial ecology in a hypersaline coastal lagoon. Limnol Oceanogr.

DOI: https://doi.org/10.1002/lno.12637

Contents:

1. Qiime processing of raw paired-end reads with DADA2
2. Main Analyses
3. PICRUSt Analyses
4. File of PICRUSt predicted KEGG orthologs (pred_metagenome_unstrat.tsv)

Raw reads are available at x