Skip to content

Pull requests: chanzuckerberg/cz-benchmarks

New pull request New
22 Open 292 Closed
22 Open 292 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Updating documentation around perturbation task changes.
#419 opened Sep 23, 2025 by polinabinder1 Loading…
chore(main): release 0.11.3 autorelease: pending
#416 opened Sep 17, 2025 by czi-github-helper bot Loading…
Pbinder/task feat changes
#404 opened Sep 16, 2025 by polinabinder1 Loading…
71
feat: improve DE data generation
#399 opened Sep 15, 2025 by mlgill • Draft BYOModel
6
chore(deps): bump mlflow from 2.17.0 to 2.22.2 in /docker/geneformer dependencies Pull requests that update a dependency file python Pull requests that update python code
#396 opened Sep 12, 2025 by dependabot bot Loading…
1
feat: Add sequential organization task and datasets
#393 opened Sep 11, 2025 by atolopko-czi • Draft
1
feat: add cross-species cell labeling task (VC-3869)
#380 opened Aug 20, 2025 by steveherrin Loading…
9
DO NOT MERGE tracking commits to equivalency testing files
#377 opened Aug 19, 2025 by mlgill • Draft
@mlgill
chore: CCIE-4984 conform to open sourcing guidelines
#372 opened Aug 11, 2025 by wontonst Loading…
chore(deps): bump transformers from 4.49.0 to 4.53.0 in /docker/geneformer dependencies Pull requests that update a dependency file python Pull requests that update python code
#367 opened Aug 6, 2025 by dependabot bot Loading…
Patch/scgenept consistent data
#316 opened Jul 14, 2025 by armaos Loading…
doc: Model adapter design
#285 opened Jun 24, 2025 by saugupta1 Loading…
23
chore(deps): bump mlflow from 2.17.0 to 3.1.0 in /docker/scvi dependencies Pull requests that update a dependency file python Pull requests that update python code
#284 opened Jun 24, 2025 by dependabot bot Loading…
docs: initial draft of asset manager design
#283 opened Jun 18, 2025 by saugupta1 Loading…
1
1
docs: design for dataset compatibility checker and declarative validations
#281 opened Jun 18, 2025 by saugupta1 Loading…
1
24
V1.0 byomodel adapter v2
#273 opened Jun 10, 2025 by saugupta1 Loading…
43
PR: Add non_control_mean baseline to set_baseline() for perturbation prediction
#272 opened Jun 9, 2025 by realmjstrumillo Loading…
1
test: 243-automate-model-regression-tests
#268 opened Jun 3, 2025 by ohvillasenor • Draft
chore(deps): bump torch from 2.4.1 to 2.7.0 in /docker/uce dependencies Pull requests that update a dependency file python Pull requests that update python code
#262 opened May 30, 2025 by dependabot bot Loading…
chore: initial proposal for user feedback issue templates
#196 opened May 6, 2025 by atolopko-czi Loading…
6
feat: speedup task runtime with cuML
#190 opened May 2, 2025 by valenzuelaomar Loading…
1
11
chore(deps): bump mlflow from 2.17.0 to 2.20.3 in /docker/uce dependencies Pull requests that update a dependency file python Pull requests that update python code
#122 opened Mar 21, 2025 by dependabot bot Loading…
ProTip! Filter pull requests by the default branch with base:main.