Use specific MzIdentMLType version (standard/primitive) in the parser.

chhh · Oct 2, 2017 · 20c6140 · 20c6140
1 parent 4c6f07c
commit 20c6140
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/MSFileToolbox/src/umich/ms/fileio/filetypes/mzidentml/MzIdentMLParser.java b/MSFileToolbox/src/umich/ms/fileio/filetypes/mzidentml/MzIdentMLParser.java
@@ -16,7 +16,6 @@
 package umich.ms.fileio.filetypes.mzidentml;
 
 import umich.ms.fileio.exceptions.FileParsingException;
-import umich.ms.fileio.filetypes.mzidentml.jaxb.standard.MzIdentMLType;
 import umich.ms.fileio.util.jaxb.JaxbUtils;
 
 import javax.xml.bind.JAXBException;
@@ -34,14 +33,15 @@ private MzIdentMLParser() {} // no instances
      * @param path path to the file to parse
      * @return auto-generated representation of the file, read the MzIdentML schema for details.
      */
-    public static MzIdentMLType parse(Path path) throws FileParsingException {
+    public static umich.ms.fileio.filetypes.mzidentml.jaxb.standard.MzIdentMLType parse(Path path) throws FileParsingException {
         try {
             XMLStreamReader xsr = JaxbUtils.createXmlStreamReader(path, false);
-            MzIdentMLType mzIdentMLType = JaxbUtils.unmarshall(MzIdentMLType.class, xsr);
+            umich.ms.fileio.filetypes.mzidentml.jaxb.standard.MzIdentMLType mzIdentMLType = JaxbUtils.unmarshall(umich.ms.fileio.filetypes.mzidentml.jaxb.standard.MzIdentMLType.class, xsr);
             return mzIdentMLType;
         } catch (JAXBException e) {
             throw new FileParsingException(
                     String.format("JAXB parsing of MzIdentML file failed (%s)", path.toAbsolutePath().toString()), e);
         }
     }
+
 }