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# DeltaMass: view and interrogate open search proteomics data

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<img width="100%" src="https://raw.githubusercontent.com/chhh/deltamass/develop/img/deltamass-ui-new_plot-display-02.png" />
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<img width="100%" src="https://raw.githubusercontent.com/chhh/deltamass/develop/img/histogram-problems-01.png" />
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This program will plot mass-differences from a proteomic "Open Search".
An "Open Search" is any search of fragmentation spectra (MS2) against a
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results that fall into this range.
* `RMB click` - options for the plot (__Preferences__), you can also save the
plot from here (prefer saving to _PNG_) and change how zooming works.


# Citing
If you have used this software in your work or research, please cite:
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<b>Manuscript</b>
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Dmitry M. Avtonomov, Andy Kong, and Alexey I. Nesvizhskii, "DeltaMass: Automated Detection and Visualization of Mass Shifts in Proteomic Open-Search Results". J. Proteome Res., 2019, 18 (2), pp 715–720
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<b>DOI</b>
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10.1021/acs.jproteome.8b00728
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<b>BibTex</b>
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<pre>
@article{Avtonomov2019,
author = {Avtonomov, Dmitry M. and Kong, Andy and Nesvizhskii, Alexey I.},
title = {DeltaMass: Automated Detection and Visualization of Mass Shifts in Proteomic Open-Search Results},
journal = {J. Proteome Res.},
publisher = {American Chemical Society},
year = {2019},
volume = {18},
number = {2},
pages = {715--720},
url = {https://doi.org/10.1021/acs.jproteome.8b00728},
doi = {https://doi.org/10.1021/acs.jproteome.8b00728}
}
</pre>
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