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* added pocket KLIFS region and colors to KLIFS module; updated databases notebook; updated poetry lock to add Bio

* added data viz packages via Poetry; added KLIFS pocket annotations from OpenCADD; added colors in database module

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* added documentation to colors module

* updated cbioportal to make save optional flag

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* updated test for cbioportal changes

* updated CLI for cbioportal changes

* updated getting started docs, cbioportal, config, and pfam find_pfam_domain

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* updated testing so not removing csv since not saving

* fixed coloring issue

* updated database notebook, Poetry, and colors

* updated colors and notebooks

* tminor changes to klifs_pocket and rtk_seq_similarity notebooks

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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jessicaw9910 and pre-commit-ci[bot] authored Jun 5, 2024
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6 changes: 2 additions & 4 deletions notebooks/klifs_pocket.ipynb

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112 changes: 56 additions & 56 deletions notebooks/rtk_seq_similarity.ipynb

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