The kPCA class we implemented is in "kernelpca.R", and it is the one used on our experiments. There is a small tutorial on how to use our class at the beginning of "Experiments.R", but its use was heavily inspired by "kernlab::kpca".
The experiments commented in the report are in the file "Experiments.R", which can be executed end-to-end as is. Nevertheless, it is almost like a small step-by-step guide.
Dependencies of "Experiments.R" are: 'kernlab', 'datasets', 'mlbench', 'BKPC' and our class 'kernpca.R'.
Dependencies of "kernpca.R" are: 'kernlab'.