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CNApy 1.1.3
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@Paulocracy Paulocracy released this 22 Sep 12:24
· 74 commits to master since this release
v1.1.3
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Major new feature

  • CNApy can now use interactive Escher maps, including the ability to load, save and edit them thanks to @axelvonkamp's integration of the Escher in CNApy. From now on, Escher maps are the 2nd type of possible interactive metabolic model maps in CNApy, together with the "traditional" CNApy maps (#401). If you encounter any problems with Escher maps in CNApy, please let us know through our GitHub issues.

Bug fixes

  • Editing a GPR rule does not create many new orphaned genes anymore (#329)
  • CNApy now always downloads the latest CNApy projects version (#398)
  • Scenario objectives are not deleted when using flux history values (#404)
  • StrainDesign now comes in version 1.9, fixing some crashes with GLPK.
  • Escher also works within cobra packages and the .exe installer version (#406)

Further changes

  • Again, some vertical space is saved by rearranging the reaction view's content, making it more readable with smaller screens (#402)
  • Various optimizing refactorings (#396, #400)

Installation Options

There are three ways to install CNApy:

  1. As the easiest installation way which only works under Windows, you can use the .exe installer attached to the assets at the bottom of CNApy's latest release.
  2. Under any operating system, you can install CNApy as a conda package as described in section Install CNApy as conda package.
  3. If you want to develop CNApy, follow the instruction for the successful cloning of CNApy in section Setup the CNApy development environment.

Contributors

axelvonkamp
Assets 3
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