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collaborativebioinformatics

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  1. STRdust STRdust Public

    Python 13 3

  2. Sniphles Sniphles Public

    Sniphles is a read-based phasing approach for phased variant calling of structural variants.

    Python 12 2

  3. GeneVar GeneVar Public

    Jupyter Notebook 12 3

  4. nibSV nibSV Public

    Nim 9 4

  5. GeneVar2 GeneVar2 Public

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  6. Disease_subsetting Disease_subsetting Public

    Colorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysis

    Jupyter Notebook 9 2

Repositories

Showing 10 of 95 repositories
  • Cis_and_trans_effects_on_variant_penetrance Public
    Shell 0 MIT 0 0 0 Updated Apr 10, 2025
  • Blended_seq_imputation Public

    a Nextflow pipeline for generating imputation reference panels using 1000 Genomes and HGDP data to enhance variant calling in Blended Genome Exome sequencing

    Jupyter Notebook 2 MIT 0 0 0 Updated Mar 10, 2025
  • Multiomic_graph Public
    Jupyter Notebook 1 MIT 1 0 0 Updated Mar 7, 2025
  • Longitudinal_emr_accleRation Public
    R 1 MIT 0 0 0 Updated Mar 5, 2025
  • LenskAI Public
    Jupyter Notebook 2 MIT 0 0 0 Updated Mar 5, 2025
  • Haplotype_matrix_clustering Public
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 5, 2025
  • MoVana Public
    WDL 0 MIT 0 0 0 Updated Jan 9, 2025
  • LLM_SVs Public
    Python 0 MIT 0 0 0 Updated Dec 19, 2024
  • tandemrepeats Public

    Tandem Repeats Team -- 2024 SVCC Hackathon

    Jupyter Notebook 1 MIT 0 0 0 Updated Dec 19, 2024
  • SpikeVarTykeVar Public
    Python 8 MIT 5 0 0 Updated Dec 19, 2024
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