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feat: docstrings and overall design for expectation maximization iterative refinement #21

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feat: docstrings and overall design for expectation maximization iterative refinement #21

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a2629da
Init
jedyeo Mar 20, 2022
ccc4359
precommit yaml
jedyeo Mar 20, 2022
186fddc
remove ref
jedyeo Mar 20, 2022
62b9f42
Format code with black and isort
deepsource-autofix[bot] Mar 20, 2022
ee5adab
Docstrings, precommit broken?
jedyeo Mar 20, 2022
b027987
Format code with black and isort
deepsource-autofix[bot] Mar 20, 2022
26dcf79
Update docstrings
jedyeo Mar 21, 2022
2110a8a
Format code with black and isort
deepsource-autofix[bot] Mar 21, 2022
f493da6
Dummy tests
Mar 22, 2022
00b8afb
docstrings and tests
jedyeo Mar 22, 2022
387c8ed
Format code with black and isort
deepsource-autofix[bot] Mar 22, 2022
be31e4c
Minor ds change. Fixed tests w/ fixture
jedyeo Mar 22, 2022
bb3b232
Minor ds change. Fixed tests w/ fixture
jedyeo Mar 22, 2022
7d42322
Format code with black and isort
deepsource-autofix[bot] Mar 22, 2022
e3becc4
Minor docstring changes
jedyeo Mar 23, 2022
e12673d
minor ds changes
jedyeo Mar 23, 2022
dd4d35b
ds changes
jedyeo Mar 23, 2022
2429d1b
Change class docstring
jedyeo Mar 24, 2022
e8503c2
Remove todo's breaking deepsource
jedyeo Mar 24, 2022
87a9a87
Format code with black and isort
deepsource-autofix[bot] Mar 24, 2022
65273f0
DeepSource changes
jedyeo Mar 24, 2022
5309ac8
deepsoruce changes
jedyeo Mar 24, 2022
d5ea497
Format code with black and isort
deepsource-autofix[bot] Mar 24, 2022
1a79772
literals removed
jedyeo Mar 24, 2022
c473d43
literals removed
jedyeo Mar 24, 2022
38a9a5e
add pre commit
jedyeo Mar 24, 2022
7a4de6f
Init tests
jedyeo Mar 24, 2022
df6c749
temporary static methods
jedyeo Mar 24, 2022
6849b0c
Format code with black and isort
deepsource-autofix[bot] Mar 24, 2022
4e927ab
temporary static methods
jedyeo Mar 24, 2022
93ca7fc
ds changes
jedyeo Mar 24, 2022
ea2c766
ds changes
jedyeo Mar 24, 2022
714b33d
changed deepsource
jedyeo Mar 24, 2022
5b4db6e
lint
jedyeo Mar 24, 2022
ccd0d04
add black back
jedyeo Mar 24, 2022
c8f3c60
Format code with black
deepsource-autofix[bot] Mar 24, 2022
c2726b2
update toml
jedyeo Mar 24, 2022
7f96273
ds
jedyeo Mar 24, 2022
3d4ad77
added .ini for pytest
jedyeo Mar 24, 2022
b293181
init
jedyeo Mar 24, 2022
02eec0a
Codecov files
Mar 24, 2022
49138c7
Linting files
Mar 24, 2022
6135c72
Dev requirements
Mar 24, 2022
f54ece8
Environment config
Mar 24, 2022
b9b540e
Added setup.py
Mar 24, 2022
afd7290
env yaml
jedyeo Mar 24, 2022
5a4a56e
Reformatted docstrings
Mar 24, 2022
e504e32
Format code with black
deepsource-autofix[bot] Mar 24, 2022
a282ffc
Testing workspace changes
Mar 24, 2022
43a440e
Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSP…
Mar 24, 2022
1a0af09
Fixed test docstrings
Mar 24, 2022
3d1be9b
Format code with black
deepsource-autofix[bot] Mar 24, 2022
5268b73
Edited module name
Mar 24, 2022
3e638af
Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSP…
Mar 24, 2022
984af8a
Linting fixes
Mar 24, 2022
eecb97e
Format code with black
deepsource-autofix[bot] Mar 24, 2022
f7f98b4
Linting fixes
Mar 24, 2022
1a79652
Linting fixes
Mar 24, 2022
d2faa25
Fixed imports
Mar 24, 2022
a3eedd6
Readded simSPI import
Mar 24, 2022
c898048
Fixed function reference
Mar 24, 2022
71356a5
Fixed test_build_ctf_array
Mar 24, 2022
0522a91
tets
jedyeo Mar 24, 2022
ee0ef8f
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deepsource-autofix[bot] Mar 24, 2022
7141f37
Reworked tests to use consistent array sizing
Mar 24, 2022
5d0d1a1
Tab snuck in
Mar 24, 2022
7289762
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deepsource-autofix[bot] Mar 24, 2022
f1bd414
Comment change to force checks
Mar 24, 2022
756adbe
Fixes to tests
Mar 24, 2022
40a6fb0
Refactored tests a bit
Mar 24, 2022
5c74fb3
Fix to test_split_array
Mar 24, 2022
c210d36
Fix to test_generate_xy_plane
Mar 24, 2022
8753a1f
Docstring fix
Mar 24, 2022
1ce2209
Deepsource tricked me
Mar 24, 2022
0673ebb
Dosctring to force checks
Mar 24, 2022
ae8c96f
Fixture fix:
Mar 24, 2022
16a0b90
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deepsource-autofix[bot] Mar 24, 2022
3c3595c
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deepsource-autofix[bot] Mar 24, 2022
a5bc9ee
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deepsource-autofix[bot] Mar 24, 2022
b76ec98
Format code with black
deepsource-autofix[bot] Mar 24, 2022
b58ba2f
Forcing checks again...
Mar 24, 2022
1fb62fa
Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSP…
Mar 24, 2022
98a879c
Format code with black
deepsource-autofix[bot] Mar 24, 2022
a1dc0cd
Better ctf_info for tests
Mar 24, 2022
5818e9e
Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSP…
Mar 24, 2022
4bcf15a
Format code with black
deepsource-autofix[bot] Mar 24, 2022
ecee780
Strings not variables...
Mar 24, 2022
f9c4196
Merging
Mar 24, 2022
0ac923c
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deepsource-autofix[bot] Mar 24, 2022
cb7b069
Fix
Mar 24, 2022
0fb3b1b
Fix
Mar 24, 2022
966ed3c
test fixes
Mar 24, 2022
ccbd07b
Format code with black
deepsource-autofix[bot] Mar 24, 2022
4858d54
Test fixes
Mar 24, 2022
b7b8688
Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSP…
Mar 24, 2022
bc88498
Force checks
Mar 24, 2022
ab014c5
Format code with black
deepsource-autofix[bot] Mar 24, 2022
656b5d2
test fixes
Mar 24, 2022
4a86e20
Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSP…
Mar 24, 2022
b9e72ad
Forcing checks
Mar 24, 2022
5577ded
Reshape fix
Mar 24, 2022
bb6e258
Shape fix
Mar 24, 2022
81e5faa
Structure changes
Mar 24, 2022
a2f4b52
Test framework adjustment
Mar 24, 2022
17f94ca
Import change
Mar 24, 2022
9f7ee21
Small typo fixes
thisFreya Mar 24, 2022
0d418b9
Added a slightly more comprehensive split test
thisFreya Mar 24, 2022
e6410cd
Format code with black
deepsource-autofix[bot] Mar 24, 2022
511d105
Added back references
Mar 24, 2022
b575e13
Added the big method
thisFreya Mar 25, 2022
41a5807
Format code with black
deepsource-autofix[bot] Mar 25, 2022
22efe76
Pre-commit and black changes
thisFreya Mar 25, 2022
5a22371
Merging
thisFreya Mar 25, 2022
bda6275
Deepsource
thisFreya Mar 25, 2022
976be19
Expanded split_array to allow lists and tuples
thisFreya Mar 25, 2022
00e7281
Format code with black
deepsource-autofix[bot] Mar 25, 2022
ff36588
Deepsource fix
thisFreya Mar 25, 2022
8de2090
Merge branch 'itr_ref_docstrings' of https://github.com/compSPI/recon…
thisFreya Mar 25, 2022
b8e37ef
Fixed split_array expansion
thisFreya Mar 25, 2022
abfd9aa
Fix to fsc test
thisFreya Mar 25, 2022
e1cd120
Data type fix
thisFreya Mar 25, 2022
83d9cf7
Concatenate fix
thisFreya Mar 25, 2022
f8dc07a
Change to insert slice shape
Mar 25, 2022
352a989
Format code with black
deepsource-autofix[bot] Mar 25, 2022
d381e3c
fix to numpy array initialization
Mar 25, 2022
56f02a1
Merging
Mar 25, 2022
294d4b5
Format code with black
deepsource-autofix[bot] Mar 25, 2022
3819306
num rotations change
Mar 25, 2022
2b25434
Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSP…
Mar 25, 2022
f28ccfa
Format code with black
deepsource-autofix[bot] Mar 25, 2022
c053980
fsc fix
Mar 25, 2022
89cdaa8
Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSP…
Mar 25, 2022
7083a54
Forgot what a dot product did for a second there
Mar 25, 2022
2a1eda7
Updated iterative refinement test to reflect fsc fix
Mar 25, 2022
cba9320
Removed superfluous imports
Mar 27, 2022
d40e6ae
Updated docstrings, fixed splitting arrs
Mar 27, 2022
6c6e1f0
Split n into n_pix, n_particles
Mar 27, 2022
1e11a9d
Format code with black
deepsource-autofix[bot] Mar 27, 2022
d621fb1
Added back numba
Mar 27, 2022
b48b5ef
Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSP…
Mar 27, 2022
496f88a
Force checks
Mar 27, 2022
8aaff78
n_pix in fft docstrings
Mar 28, 2022
33e3229
Normalizing half maps
Mar 28, 2022
01ceaf5
Format code with black
deepsource-autofix[bot] Mar 28, 2022
20f2232
Removed comments, refactored big method, fixed bayesian weights shapes
Mar 31, 2022
e76d8a2
Format code with black
deepsource-autofix[bot] Mar 31, 2022
6e7ed32
Infrastructure files
Mar 31, 2022
6a9ee69
Infrastructure files
Mar 31, 2022
fd9cefa
Missed a name
Mar 31, 2022
bb8b274
Removed last few comments, will re-add if needed
Mar 31, 2022
66c0ef3
Format code with black
deepsource-autofix[bot] Mar 31, 2022
b9e8c10
Merging changes
Mar 31, 2022
579f716
Fixed variable name
Mar 31, 2022
6fe971c
Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSP…
Mar 31, 2022
55ee718
Changed codecov parameters
Mar 31, 2022
0d18f66
Removed __init__.py files
Mar 31, 2022
7f81456
Revert "Removed __init__.py files"
Mar 31, 2022
887bff7
Merging
Mar 31, 2022
e583a54
Revert "Changed codecov parameters"
Mar 31, 2022
aa607f3
Merge branch 'reconstructSPI_infrastructure' of github.com:compSPI/re…
Mar 31, 2022
15840cf
Refactoring library format
Mar 31, 2022
2f91bc6
Directory fixes
Mar 31, 2022
bccb41c
Revert "Refactoring library format"
Mar 31, 2022
2c42e8d
Revert "Directory fixes"
Mar 31, 2022
9126f86
Removed dependencies
Mar 31, 2022
3330c11
Testing something
Mar 31, 2022
aaf1078
Merge branch 'reconstructSPI_infrastructure' of github.com:compSPI/re…
Mar 31, 2022
ef10249
Testing things
Mar 31, 2022
d15bdb6
Merge branch 'reconstructSPI_infrastructure' of github.com:compSPI/re…
Mar 31, 2022
8dda440
Force checks
Mar 31, 2022
749bcd2
Testing things
Mar 31, 2022
2ea9459
Added library requirements
Mar 31, 2022
5152547
Added dev branch to branches on which tests will run.
Mar 31, 2022
5a4ebb5
Merging changes. Have temporarily added infrastructure branch to work…
Mar 31, 2022
9d05c1a
removed itr_ref_docstrings branch checks
Mar 31, 2022
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