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tutorials for various techniques available in the R Package TDA

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R package TDA tutorial

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Developing new tutorials

Tutorials are written in Rmarkdown and compiled into a website using jekyll and the R package servr. The simplest way to get going writing your own is to clone the repository and open the rpackage_tutorials.Rproj file in Rstudio. Opening the R project file will automatically load the environment from the .Rprofile file in the root folder of the directory. When opening the environment, R will automatically load (and install if needed) the TDA package in R. It also loads a number of useful functions for generating and serving the tutorials. First, we want to generate and serve the current version of the tutorials. We first need to make sure we have the bundler and jekyll ruby gems installed. Setting up these ruby gems is easy!! From the command line run in the root directory of the project repo, run:

 $ gem install bundler jekyll
 $ bundle install

Now, in RStudio, first run the following two commands to generate and serve the tutorial files:

  `gen_blog()`
  `serve_blog()`

If all goes well, the server should start and you should see something like the following output:

Configuration file: .../rpackage_tutorials/_config.yml
            Source: .../rpackage_tutorials
       Destination: .../rpackage_tutorials/_site
 Incremental build: disabled. Enable with --incremental
      Generating...
       Jekyll Feed: Generating feed for posts
                    done in 0.464 seconds.
 Auto-regeneration: enabled for '.../rpackage_tutorials'
    Server address: http://127.0.0.1:4000/rpackage_tutorials/
  Server running... press ctrl-c to stop.

The blog should automatically show up in the viewer pane of RStudio and you can navigate what the tutorials webpage should look like when changes are commited.

You can also enter the value for Server address into your browser and you should see the site that you are creating.

To make a new post create a file in _posts with named formmatted as <date>_<topic>.md. At the beginning of the file add a header with the following:

---
layout: "post"
title: "Title of your tutorial"
author: "Your name"
---

# Name of your tutorial

.... then add your content ....

That is it, everything you make a change, jekyll will recompile your tutorial and you can reload your site.

Issue a PR whenever you are ready to start the discussion and thank you for collaborating!!

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