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@comprna

Computational RNA Biology group

Computational RNA Biology group

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  1. riser riser Public

    Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing

    Python 10 3

  2. CHEUI CHEUI Public

    Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

    C++ 30 2

  3. R2Dtool R2Dtool Public

    Analyse RNA feature distributions.

    Jupyter Notebook 7 2

  4. RATTLE RATTLE Public

    Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

    C++ 56 9

  5. SUPPA SUPPA Public

    SUPPA: Fast quantification of splicing and differential splicing

    Python 247 60

  6. METEORE METEORE Public

    Automatic DNA methylation detection from nanopore tools and their consensus model

    R 71 18

Repositories

Showing 10 of 30 repositories
  • R2Dtool Public

    Analyse RNA feature distributions.

    comprna/R2Dtool’s past year of commit activity
    Jupyter Notebook 7 MIT 2 0 0 Updated Jul 2, 2024
  • SUPPA Public

    SUPPA: Fast quantification of splicing and differential splicing

    comprna/SUPPA’s past year of commit activity
    Python 247 MIT 60 39 1 Updated Jun 19, 2024
  • riser Public

    Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing

    comprna/riser’s past year of commit activity
    Python 10 GPL-3.0 3 0 0 Updated Jun 2, 2024
  • RATTLE Public

    Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

    comprna/RATTLE’s past year of commit activity
    C++ 56 GPL-3.0 9 18 0 Updated Feb 15, 2024
  • METEORE Public

    Automatic DNA methylation detection from nanopore tools and their consensus model

    comprna/METEORE’s past year of commit activity
    R 71 MIT 18 5 1 Updated May 22, 2023
  • CHEUI Public

    Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

    comprna/CHEUI’s past year of commit activity
    C++ 30 2 17 0 Updated May 18, 2023
  • ISOTOPE Public

    ISOform-guided prediction of epiTOPEs in cancer

    comprna/ISOTOPE’s past year of commit activity
    Python 13 GPL-3.0 6 3 0 Updated Apr 10, 2023
  • reorientexpress Public

    Transcriptome long-read orientation with Deep Learning

    comprna/reorientexpress’s past year of commit activity
    Python 9 MIT 4 2 1 Updated Mar 25, 2023
  • CHEUI-public Public

    Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

    comprna/CHEUI-public’s past year of commit activity
    1 0 0 0 Updated Nov 13, 2022
  • radian Public

    Nanopore direct RNA basecaller

    comprna/radian’s past year of commit activity
    Python 10 GPL-3.0 2 0 1 Updated Oct 27, 2022

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