Regarding output of the m6A probability and stoichiometry command

[Proy321]

I was trying to execute the following command for the prediction of m6A probability and stoichiometry at every A nucleotide site in the reference transcriptome y using following command, but unfortunately the command executed with error(attached herewith). I need help regarding the same.

python3 ../scripts/CHEUI_predict_model2.py -i read_level_m6A_predictions_sorted.txt -m ../CHEUI_trained_models/CHEUI_m6A_model2.h5 -o site_level_m6A_predictions.txt

[EduEyras]

Hi, Thanks for your message. Could you please send us a copy of your command line? Thanks Eduardo

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On Fri, 21 Jul 2023 at 15:58, Proy321 ***@***.***> wrote: I was trying to execute the following command for the prediction of m6A probability and stoichiometry at every A nucleotide site in the reference transcriptome y using following command, but unfortunately the command executed with error(attached herewith). I need help regarding the same. [image: Screenshot (33)] <https://user-images.githubusercontent.com/140142819/255085302-61952fb2-9494-4577-8f81-91fb642aef98.png> [image: Screenshot (32)] <https://user-images.githubusercontent.com/140142819/255085347-520a3122-2d9e-4b1b-aa41-d183fd14c664.png> *python3 ../scripts/CHEUI_predict_model2.py -i read_level_m6A_predictions_sorted.txt -m ../CHEUI_trained_models/CHEUI_m6A_model2.h5 -o site_level_m6A_predictions.txt* — Reply to this email directly, view it on GitHub <#22>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADCZKB5TNLSZSA6IHL7PGYDXRIK73ANCNFSM6AAAAAA2SLZ4FM> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[EduEyras]

Sorry, I just saw it at the bottom of the page *python3 ../scripts/CHEUI_predict_model2.py -i read_level_m6A_predictions_sorted.txt -m ../CHEUI_trained_models/CHEUI_m6A_model2.h5 -o site_level_m6A_predictions.txt* The command looks ok to me. There seems to be an issue with your system not finding keras? Perhaps Akanksha might be able to help Thanks Eduardo

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On Fri, 21 Jul 2023 at 16:10, Eduardo Eyras ***@***.***> wrote: Hi, Thanks for your message. Could you please send us a copy of your command line? Thanks Eduardo On Fri, 21 Jul 2023 at 15:58, Proy321 ***@***.***> wrote: > I was trying to execute the following command for the prediction of m6A > probability and stoichiometry at every A nucleotide site in the reference > transcriptome y using following command, but unfortunately the command > executed with error(attached herewith). I need help regarding the same. > > [image: Screenshot (33)] > <https://user-images.githubusercontent.com/140142819/255085302-61952fb2-9494-4577-8f81-91fb642aef98.png> > [image: Screenshot (32)] > <https://user-images.githubusercontent.com/140142819/255085347-520a3122-2d9e-4b1b-aa41-d183fd14c664.png> > > *python3 ../scripts/CHEUI_predict_model2.py -i > read_level_m6A_predictions_sorted.txt -m > ../CHEUI_trained_models/CHEUI_m6A_model2.h5 -o > site_level_m6A_predictions.txt* > > — > Reply to this email directly, view it on GitHub > <#22>, or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ADCZKB5TNLSZSA6IHL7PGYDXRIK73ANCNFSM6AAAAAA2SLZ4FM> > . > You are receiving this because you are subscribed to this thread.Message > ID: ***@***.***> >

[Proy321]

It would be nice if Akansha can guide me regarding the same.