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* Bioc feedback (#1) * ignore yaml files add *.yml to .gitignore so that they are not included in the repo * ignore yaml files add *.yml to .gitignore so that they are not included in the repo * add bioconductor install instructions * update package description to be at least three sentences * remove LazyData: true * ignore rproj * update description and add see_also see_also links to API documentation, package vignette and do_query * add donttest to example Avoid testing the do_query example in case metabolomicsworkbench is down which would cause it to fail and therefore prevent a bioconductor build. * add donttest to example avoid example during testing to prevent error if MB is down * use seq_along and seq_len replace as many cases of 1: as possible with seq_len and seq_along, as per bioconductor guidelines * split lines >80 chars and... also remove donttest and add message to show http status if its an error * version bump
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@@ -42,3 +42,7 @@ vignettes/*.pdf | |
inst/doc | ||
doc | ||
Meta | ||
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# yaml | ||
*.yml | ||
*.Rproj |
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Package: metabolomicsWorkbenchR | ||
Type: Package | ||
Title: Metabolomics Workbench in R | ||
Version: 0.99.3 | ||
Version: 0.99.4 | ||
Authors@R: c( | ||
person( | ||
c("Gavin","Rhys"), | ||
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@@ -15,13 +15,13 @@ Authors@R: c( | |
email="[email protected]") | ||
) | ||
Description: This package provides functions for interfacing with the | ||
Metabolomics Workbench RESTful API to access study, compound, protein and gene | ||
information. Methods to obtain study data in common Bioconductor formats such | ||
as SummarizedExperiment and MultiAssayExperiment are also included. | ||
Metabolomics Workbench RESTful API. Study, compound, protein and gene | ||
information can be searched for using the API. Methods to obtain study | ||
data in common Bioconductor formats such as SummarizedExperiment and | ||
MultiAssayExperiment are also included. | ||
License: GPL-3 | ||
Encoding: UTF-8 | ||
LazyData: true | ||
RoxygenNote: 7.1.0 | ||
RoxygenNote: 7.1.1 | ||
Collate: | ||
'parse_fcns.R' | ||
'generics.R' | ||
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